Phyre 2 alignment of P77539 with c1piwA

Job Description P77539
Confidence 100.00% Date Thu Jan 5 12:30:22 GMT 2012

Rank 23 Aligned Residues 343

% Identity 19% Template c1piwA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical zinc-type alcohol dehydrogenase- PDBTitle: apo and holo structures of an nadp(h)-dependent cinnamyl2 alcohol dehydrogenase from saccharomyces cerevisiae

Resolution 3.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.
Predicted Secondary structure											.																																																																	.
Query SS confidence											.																																																																	.
Query Sequence	M	K	A	L	A	R	F	G	K	A	.	F	G	G	Y	K	M	I	D	V	P	Q	P	M	C	G	P	E	D	V	V	I	E	I	K	A	A	A	I	C	G	A	D	M	K	H	Y	N	V	D	S	G	S	D	E	F	N	S	I	R	G	H	E	F	A	G	C	I	A	Q	V	G	E	K	V	.	K	D	W	K
Query Conservation											.																																																																	.
Alig confidence											.																																																																	.
Template Conservation
Template Sequence	F	E	G	I	A	I	Q	S	H	E	D	W	K	N	P	K	K	T	K	Y	D	P	K	P	F	Y	D	H	D	I	D	I	K	I	E	A	C	G	V	C	G	S	D	I	H	C	A	A	G	H	W	G	N	M	K	M	P	L	V	V	G	H	E	I	V	G	K	V	V	K	L	G	P	K	S	N	S	G	L	K
Template Known Secondary structure									S	S	S	T	T	S													T	T																				T	T	T	T	S				S	S																T	T			S	S
Template Predicted Secondary structure
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence	V	G	Q	R	V	V	S	D	N	S	G	H	V	C	G	V	C	P	A	C	E	Q	G	D	F	L	C	C	T	E	K	V	N	L	G	L	D	N	.	.	.	.	N	T	W	G	G	G	F	S	K	Y	C	L	V	P	G	E	I	L	K	I	H	R	H	A	L	W	E	I	P	D	G	V	D	Y	E	D	A	A
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence	V	G	Q	R	V	G	V	G	A	Q	V	F	S	C	L	E	C	D	R	C	K	N	D	N	E	P	Y	C	T	K	F	V	T	T	Y	S	Q	P	Y	E	D	G	Y	V	S	Q	G	G	Y	A	N	Y	V	R	V	H	E	H	F	V	V	P	.	.	.	.	.	.	.	I	P	E	N	I	P	S	H	L	A	A
Template Known Secondary structure	T	T							S						S		S					T	T		G	G	G		T	T				S	S	S		B		T	T	S		B				S	S	B	S						G	G	G				.	.	.	.	.	.	.			T	T	S						G
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.

	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	L	D	P	I	C	N	A	Y	K	S	I	A	Q	Q	S	K	F	L	P	G	Q	D	V	V	V	I	G	T	G	P	L	G	L	F	S	V	Q	M	A	R	I	M	G	A	V	N	I	V	V	V	G	L	Q	E	D	V	A	V	R	F	P	V	A	K	E	L	G	A	T	A	V	V	N	G	S	T	E	D	V
Query Conservation
Alig confidence																																																																												.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence	P	L	L	C	G	G	L	T	V	Y	S	P	L	V	R	N	G	C	G	P	G	K	K	V	G	I	V	G	L	G	G	I	G	S	M	G	T	L	I	S	K	A	M	G	A	E	T	Y	V	I	S	R	S	S	R	K	R	E	D	A	M	K	M	G	A	D	H	Y	I	A	T	L	E	E	G	.	.	.	.	.
Template Known Secondary structure	G	G	G	T												T	T		S	T	T									S														T								S	S	S	T	T								T		S					G	G	G	T	S	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	A	R	C	Q	Q	I	C	G	K	D	N	L	G	L	V	I	E	C	S	G	A	N	I	A	L	K	Q	A	I	E	M	L	R	P	N	G	E	V	V	R	V	G	M	G	F	K	P	L	D	F	S	I	N	D	I	T	A	W	N	K	S	I	I	G	H	M	A	Y	D	S	T	S	W	R	N	A	I	R	L
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	D	W	G	E	K	Y	F	D	T	F	D	L	I	V	V	C	A	S	S	L	T	D	I	D	F	N	I	M	P	K	A	M	K	V	G	G	R	I	V	S	I	S	I	P	E	Q	H	E	M	L	S	L	K	P	Y	G	L	K	A	V	S	I	S	Y	S	A	L	G	S	I	K	E	L	N	Q	L	L	K	L
Template Known Secondary structure	.						S		S										S		S	T	T			T	T	T	G	G	G	G															S	S							G	G	G		S	S
Template Predicted Secondary structure	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																			.
Query SS confidence																.																			.
Query Sequence	L	A	S	G	A	I	K	V	K	P	M	I	T	H	R	.	I	G	L	S	Q	W	R	E	G	F	D	A	M	V	D	K	T	A	.	I	K	V	I	M	T	Y	D	F	D	E
Query Conservation																.																			.
Alig confidence										.	.					.																			.
Template Conservation										.	.
Template Sequence	V	S	E	K	D	I	K	I	W	.	.	V	E	T	L	P	V	G	E	A	G	V	H	E	A	F	E	R	M	E	K	G	D	V	R	Y	R	F	T	L	V	G	Y	D	K	E
Template Known Secondary structure				T	T					.	.						S	S														T			S	S
Template Predicted Secondary structure										.	.
Template SS confidence
	314	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions