Job Description P77539 Confidence 100.00% Date Thu Jan 5 12:30:22 GMT 2012 Rank 11 Aligned Residues 343 % Identity 21% Template c1kolA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:formaldehyde dehydrogenase; PDBTitle: crystal structure of formaldehyde dehydrogenase Resolution 1.65 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.
Query Sequence		K	A	L	A	R	F	G	K	A	F	G	G	Y	K	M	I	D	V	P	Q	P	M	.	.	.	.	.	.	.	C	G	P	E	D	V	V	I	E	I	K	A	A	A	I	C	G	A	D	M	K	H	Y	N	V	D	S	G	S	D	E	F	N	S	I	R	G	H	E	F	A	G	C	I	A	Q	V	G	E	K	V
Query Conservation																								.	.	.	.	.	.	.
Alig confidence											.	.												.	.	.	.	.	.	.																															.
Template Conservation											.	.																																																	.
Template Sequence		R	G	V	V	Y	L	G	S	G	.	.	K	V	E	V	Q	K	I	D	Y	P	K	M	Q	D	P	R	G	K	K	I	E	H	G	V	I	L	K	V	V	S	T	N	I	C	G	S	D	Q	H	M	V	R	G	R	T	T	A	Q	.	V	G	L	V	L	G	H	E	I	T	G	E	V	I	E	K	G	R	D	V
Template Known Secondary structure									T	T	.	.												S	B		T	T	S		B		S	S																				T	T		S				.	T	T		B														T	T
Template Predicted Secondary structure											.	.																																																	.
Template SS confidence
		4	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.
Query Sequence		K	D	W	K	V	G	Q	R	V	V	S	D	N	S	G	H	V	C	G	V	C	P	A	C	E	Q	G	D	F	L	C	C	T	E	K	V	N	L	G	L	.	.	.	.	.	.	.	D	N	N	T	W	G	G	G	F	S	K	Y	C	L	V	P	G	E	I	L	K	I	H	R	H	A	L	W	E	I	P	D	G
Query Conservation																																										.	.	.	.	.	.	.
Alig confidence														.																												.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation														.																																																							.	.	.	.	.
Template Sequence		E	N	L	Q	I	G	D	L	V	S	V	P	.	F	N	V	A	C	G	R	C	R	S	C	K	E	M	H	T	G	V	C	L	T	V	N	P	A	R	A	G	G	A	Y	G	Y	V	D	M	G	D	W	T	G	G	Q	A	E	Y	V	L	V	P	Y	A	D	F	.	.	.	.	.	N	L	L	K	L	P	D	R
Template Known Secondary structure			S			T	T							.	S					S	S	S					T	T		G	G	G		S	S	S		S	S	S	S				B	T		T	T	S			B				S	B	S					S	S				.	.	.	.	.						S
Template Predicted Secondary structure														.																																																							.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.
		148	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		V	D	Y	E	D	A	.	.	.	.	A	V	L	D	P	I	C	N	A	Y	K	S	I	A	Q	Q	S	K	F	L	P	G	Q	D	V	V	V	I	G	T	G	P	L	G	L	F	S	V	Q	M	A	R	I	M	G	A	V	N	I	V	V	V	G	L	Q	E	D	V	A	V	R	F	P	V	A	K	E	L	G	A
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																																																								.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		D	K	A	M	E	K	I	R	D	L	T	C	L	S	D	I	L	P	T	G	Y	H	G	A	V	T	A	G	V	G	P	G	S	T	V	Y	V	A	G	A	G	P	V	G	L	A	A	A	A	S	A	R	L	L	G	A	A	V	V	I	V	G	D	L	N	.	.	.	P	A	R	L	A	H	A	K	A	Q	G	F
Template Known Secondary structure							T					G	G	G	G	T												T	T			T	T									S													T	T		S							S		.	.	.										T	T
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		T	A	V	V	N	G	S	T	E	D	V	V	A	R	C	Q	Q	I	C	G	K	D	N	L	G	L	V	I	E	C	S	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	A	L	K	Q	A	I	E	M	L	R	P	N	G	E	V	V	R	V	G	M	G	F	K	P	L	D	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		E	I	A	D	L	S	L	D	T	P	L	H	E	Q	I	A	A	L	L	G	E	P	E	V	D	C	A	V	D	A	V	G	F	E	A	R	G	H	G	H	E	G	A	K	H	E	A	P	A	T	V	L	N	S	L	M	Q	V	T	R	V	A	G	K	I	G	I	P	G	L	Y	V	T	E	D	P	G	A	V	D
Template Known Secondary structure						T	T	S	S	S											S	S	S											T	T		B		S	S	T	T	G	G	G	S	B		T	T																				S				S			T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
											285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																											.
Query SS confidence		.	.	.	.	.	.	.	.	.																																											.
Query Sequence		.	.	.	.	.	.	.	.	.	F	S	I	N	D	I	T	A	W	N	K	S	I	I	G	H	M	A	Y	D	S	T	S	W	R	N	A	I	R	L	L	A	S	G	A	I	K	V	K	P	M	I	.	T	H	R	I	G	L	S	Q	W	R	E	G	F	D	A	M	V	D	K	T	A	I	K	V	I	M	T	Y
Query Conservation		.	.	.	.	.	.	.	.	.																																											.
Alig confidence		.	.	.	.	.	.	.	.	.																																											.
Template Conservation
Template Sequence		A	A	A	K	I	G	S	L	S	I	R	F	G	L	G	W	A	K	S	H	S	F	H	T	G	Q	T	P	V	M	K	Y	N	R	A	L	M	Q	A	I	M	W	D	R	I	N	I	A	E	V	V	G	V	Q	V	I	S	L	D	D	A	P	R	G	Y	G	E	F	D	A	G	V	P	K	K	F	V	I	D	P
Template Known Secondary structure						T	T												T	T						S	S																T	T	S								T						G	G	G											T		S							T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		355	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	K
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		392	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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