Job Description P04993 Confidence 98.77% Date Thu Jan 5 10:58:32 GMT 2012 Rank 35 Aligned Residues 139 % Identity 17% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	S	D	E	I	N	W	Q	K	V	A	A	A	V	A	L	T	R	R	I	S	V	I	S	G	G	P	G	T	G	K	T	T	T	V	A	K	L	L	A	A	L	I	Q	M	A	D	G	E	R	C	R	I	R	L	A	A	P	T	G	K	A	A	A	R	L	T	E	S	L	G	K	A	L	R	Q	L	P	L	.
Query Conservation																																																																																	.
Alig confidence																																															.	.	.	.																															.
Template Conservation																																															.	.	.	.
Template Sequence		P	F	T	L	D	P	F	Q	D	T	A	I	S	C	I	D	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	.	.	.	.	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M
Template Known Secondary structure		S	S														T	T	T									S	S	S																T	.	.	.	.	T								S	S															T	S	S
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
				226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.	.																																																			.	.	.	.
Query SS confidence		.	.																																																			.	.	.	.
Query Sequence		.	.	T	D	E	Q	K	K	R	I	P	E	D	A	S	T	L	H	R	L	L	G	A	Q	P	G	S	Q	R	L	R	H	H	A	G	N	P	L	H	L	D	V	L	V	V	D	E	A	S	M	I	D	.	.	.	.	L	P	M	M	S	R	L	I	D	A	L	P	D	H	A	R	V	I	F	L
Query Conservation		.	.																																																			.	.	.	.
Alig confidence		.	.																				.	.	.	.	.	.																										.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	.	.	.	.	.	.	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D	K	V	R	Y	V	F	L
Template Known Secondary structure			S	S		B				S		S											.	.	.	.	.	.							S	S												T	G	G	G	T	T	S														S		T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.							.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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