Job Description P04993 Confidence 97.22% Date Thu Jan 5 10:58:32 GMT 2012 Rank 226 Aligned Residues 152 % Identity 20% Template c3fhcB_ PDB info PDB header:transport protein/hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with nup214 Resolution 2.80 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																.	.																																			.
Query SS confidence																																.	.																																			.
Query Sequence		E	A	L	L	A	Q	T	L	D	K	L	F	P	V	S	D	E	I	N	W	Q	K	V	A	A	A	V	A	L	T	.	.	R	R	I	S	V	I	S	G	G	P	G	T	G	K	T	T	T	V	A	K	L	L	A	A	L	I	Q	M	A	D	G	E	R	C	.	R	I	R	L	A	A	P	T	G	K	A	A	A
Query Conservation																																.	.																																			.
Alig confidence													.																			.	.																			.	.															.
Template Conservation													.																																							.	.
Template Sequence		K	P	Q	L	L	Q	G	V	Y	A	M	.	G	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	.	.	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L
Template Known Secondary structure												T	.	T			S														S	S	S											S								.	.										T	T	S		S								S	S
Template Predicted Secondary structure													.																																							.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.																.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Query Sequence		R	L	T	E	S	L	G	K	A	L	R	Q	L	P	L	T	D	E	Q	K	K	R	I	P	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	T	L	H	R	L	L	G	A	Q	P	G	S	Q	R	L	R	H	H	A	G	N	P	L	H	L	D	V	L	V	V	D	E	A	S	.	M	I
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.																					.
Template Conservation																																																			.	.	.	.	.	.	.	.
Template Sequence		Q	T	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V	L	D	W	C	.	.	.	.	.	.	.	.	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	I
Template Known Secondary structure											T	T	T		S	S							S	T	T					S	S						S														.	.	.	.	.	.	.	.			S					G	G	G													T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.									.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		275					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		D	.	.	.	.	L	P	M	M	S	R	L	I	D	A	L	P	D	H	A	R	V	I	F	L	G
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.
Template Conservation
Template Sequence		A	T	Q	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	P	R	N	C	Q	M	L	L	F	S
Template Known Secondary structure		T	S	T	T												S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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