Job Description P04993 Confidence 100.00% Date Thu Jan 5 10:58:32 GMT 2012 Rank 2 Aligned Residues 504 % Identity 30% Template c3e1sA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2 Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		L	E	A	V	E	H	K	Q	L	R	P	L	D	V	Q	F	A	L	T	V	A	G	D	E	H	P	A	V	T	L	A	A	A	L	L	S	H	D	.	A	G	E	G	H	V	C	L	P	L	S	R	L	E	N	N	E	A	S	H	P	L	L	A	T	C	V	S	E	I	G	E	L	Q	N	W	E	E	C	L	L
Query Conservation																																								.
Alig confidence															.	.	.	.	.	.	.	.																		.																						.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		V	E	G	I	G	F	L	T	A	D	K	L	W	.	.	.	.	.	.	.	.	D	D	P	R	R	L	T	A	A	A	V	Y	A	L	Q	L	A	G	T	Q	A	G	H	S	F	L	P	R	S	R	A	E	K	G	V	V	H	Y	T	.	.	.	.	R	V	T	P	G	Q	A	R	L	A	V	E	T	A	V	E
Template Known Secondary structure		S	S	S								T	T		.	.	.	.	.	.	.	.																					T			S																.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	A	V	S	R	G	D	E	P	T	P	M	I	L	C	G	D	R	L	Y	L	N	R	M	W	C	N	E	R	T	V	A	R	F	F	N	E	V	N	H	A	I	E	V	D	E	A	L	L	A	Q	T	L	D	K	L	F	P	V	S	D	E	I	N	W	Q	K	V	A	A	A	V	A	L	T	R	R	I
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence		L	G	R	L	S	E	D	D	S	P	L	F	A	A	A	T	G	E	G	R	I	Y	L	P	H	V	L	R	A	E	K	K	L	A	S	L	I	R	T	L	L	A	T	P	P	A	D	A	G	N	D	D	W	A	V	P	K	K	.	A	R	K	G	L	S	E	E	Q	A	S	V	L	D	Q	L	A	G	H	R	L
Template Known Secondary structure			T	S	S								S					S																										S														T	T	.	T	T	T	T													T	T		S
Template Predicted Secondary structure																																																												.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	S	G	G	P	G	T	G	K	T	T	T	V	A	K	L	L	A	A	L	I	Q	M	A	D	G	E	R	C	R	I	R	L	A	A	P	T	G	K	A	A	A	R	L	T	E	S	L	G	K	A	L	R	Q	L	P	L	T	D	E	Q	K	K	R	I	P	E	D	A	S	T	L	H	R	L	L	G	A
Query Conservation
Alig confidence																											.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	L	T	G	G	P	G	T	G	K	S	T	T	T	K	A	V	A	D	L	A	E	S	L	.	.	.	.	G	L	E	V	G	L	C	A	P	T	G	K	A	A	R	R	L	G	E	V	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	A	S	T	V	H	R	L	L	G	Y
Template Known Secondary structure								T	T	S																T	.	.	.	.	T								S	S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									T	T
Template Predicted Secondary structure																											.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380					.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.																		.	.	.	.	.	.	.	410	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	G	S	Q	R	L	R	H	H	A	G	N	P	L	H	L	D	V	L	V	V	D	E	A	S	M	I	D	L	P	M	M	S	R	L	I	D	A	L	P	D	H	A	R	V	I	F	L	G	D	R	D	Q	L	A	S	V	E	A	G	A	V	L	G	D	I	C	A	Y	A	N	A	G	F	T	A	E	R	A
Query Conservation
Alig confidence						.	.																																																																				.	.	.	.	.	.	.
Template Conservation						.	.																																																																				.	.	.	.	.	.	.
Template Sequence		G	P	Q	G	.	.	F	R	H	N	H	L	E	P	A	P	Y	D	L	L	I	V	D	E	V	S	M	M	G	D	A	L	M	L	S	L	L	A	A	V	P	P	G	A	R	V	L	L	V	G	D	T	D	Q	L	P	P	V	D	A	G	L	P	L	L	A	L	A	Q	A	A	P	T	.	.	.	.	.	.	.
Template Known Secondary structure			T	T		.	.		S		S	S	S	S			S		S							G	G	G											T	T	S		T	T									T	T	S				S	S	S											S			.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.																																																																				.	.	.	.	.	.	.
Template SS confidence
		415	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	S	R	L	T	G	T	H	V	P	A	G	T	G	T	E	A	A	S	L	R	D	S	L	C	L	L	Q	K	S	Y	R	F	G	S	D	S	G	I	G	Q	L	A	A	A	I	N	R	G	D	K	T	A	V	K	T	V	F	Q	Q	D	F	T	D	I	E	K	R	L	L	Q	S	G	E	D	Y	I	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	L	T	Q	V	Y	R	Q	A	A	K	N	P	I	I	Q	A	A	H	G	L	L	H	G	E	A	P	A	W	G	D	K	R	L	N	L	T	E	I	E	P	D	G	G	A	R	R	V	A	L	M	V	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T												T	T							B	T	T								S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																												486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	E	E	A	L	A	G	Y	G	R	Y	L	D	L	L	Q	A	R	A	E	P	D	L	I	I	Q	A	F	N	E	Y	Q	L	L	C	A	L	R	E	G	P	F	G	V	A	G	L	N	E	R	I	E	Q	F	M	Q	Q	K	R	K	I	H	R	H	P	H	S	R	W	Y	E	G	R	P	V	M	I	A	R
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	G	A	V	Q	V	L	T	P	M	R	K	G	P	L	G	M	D	H	L	N	Y	H	L	Q	A	L	F	N	P	G	E	G	G	V	R	I	A	E	G	E	A	R	P	G	D	T	V	V	Q	T	K
Template Known Secondary structure			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	G	G	G						S		S	S	S	T	T	S													S			S						S	S	S				T	T							S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		540	.																									.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	S	A	L	G	L	F	N	G	D	I	G	I	A	L	D	R	G	Q	G	T	R	V	W	F	A	M	P	D	G	N	I	K	S	V	Q	P	S	R	L	P	E	H	E	T	T	W	A	M	T	V	H	K	S	Q	G	S	E	F	D	H	A	A	L	I	L	P	S	Q	R	T	P	V	V	T	R	E	L	V
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		N	D	Y	N	N	E	I	F	N	G	T	L	G	M	V	L	K	A	E	G	A	R	L	T	V	D	F	.	.	D	G	N	V	V	E	L	T	G	A	E	L	F	N	L	Q	L	G	Y	A	L	T	V	H	R	A	Q	G	S	E	W	G	T	V	L	G	V	L	H	E	A	H	M	P	M	L	S	R	N	L	V
Template Known Secondary structure			B	T	T	T	T	B		T	T										S	S							.	.	T	T							G	G	G	G	T	T					S								T	T												G	G	G	G	G	G
Template Predicted Secondary structure																													.	.
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.			.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.		.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		Y	T	A	V	T	R	A	R	R	R	L	S	L	Y	A	D	E	R	I	L	S	A	A	I	A	T	.	R	T	E	R	R	S	G	L	A	A	L	F	S	S
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		Y	T	A	L	T	R	A	R	D	R	F	F	S	A	G	S	A	S	A	W	Q	I	A	A	A	R	Q	R	E	A	R	N	T	A	L	L	E	R	I	R	A
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.