Job Description P04993 Confidence 98.63% Date Thu Jan 5 10:58:32 GMT 2012 Rank 46 Aligned Residues 165 % Identity 23% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.															.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.										.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.										.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	V	A	R	F	F	N	E	V	N	H	A	I	E	V	D	E	A	L	L	A	Q	T	L	D	K	L	F	P	.	.	.	.	.	.	.	V	S	D	E	I	N	W	Q	K	.	.	V	A	A	A	V	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	R	I	S	V	I	S	G	G	P
Query Conservation																																.	.	.	.	.	.	.										.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.										.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q
Template Known Secondary structure														T	T	T																				T	T	T	T	T		S																		T	T	S	S								S	S									T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	G	K	T	T	T	V	A	K	L	L	A	A	L	I	Q	M	A	D	G	E	R	C	R	I	R	L	A	A	P	T	G	K	A	A	A	R	L	T	E	S	L	G	K	A	L	R	Q	L	P	L	T	D	E	Q	K	K	R	I	P	E	D	A	S	T	L	H	R	L	L	G	A	Q	P	G	S	Q	R	L
Query Conservation
Alig confidence																								.	.	.												.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.												.	.																																		.	.	.	.	.	.	.	.	.
Template Sequence		G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	.	.	.	L	L	V	A	A	D	T	Q	R	P	A	.	.	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	S															T	T				.	.	.							S	S				.	.													T								T	T												.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.												.	.																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.													.	.
Query SS confidence																					.	.													.	.
Query Sequence		R	H	H	A	G	N	P	L	H	L	D	V	L	V	V	D	E	A	S	.	.	M	I	D	L	P	M	M	S	R	L	I	D	.	.	A	L	P	D	H	A	R	V	I	F	L	G	D
Query Conservation																					.	.													.	.
Alig confidence		.	.																		.	.													.	.
Template Conservation		.	.
Template Sequence		.	.	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D
Template Known Secondary structure		.	.							T		S										S	S																			S
Template Predicted Secondary structure		.	.
Template SS confidence
				174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions