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Job DescriptionP04993
Confidence100.00%DateThu Jan 5 10:58:32 GMT 2012
Rank7Aligned Residues377
% Identity25%Templatec2is6B_
PDB info PDB header:hydrolase/dnaChain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   149150.........160.........170.........180.........190.........200.........210.........220........
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Query Sequence  DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE
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Template Sequence  SLNDKQREAVAA. . PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMW
Template Known Secondary structure  T

T
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SS


TTSSTS


GGGSSTTTTTT
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   910.........20 .........30.........40.........50.........60.........70.........80......
 
   229230.........240.........250.........260.
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Query Sequence  QKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHINPVEQTW
Template Known Secondary structure  TT

TT

TT

TTTS
TT

S



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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   262.......270.........280.........290.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD
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Template Sequence  QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDD
Template Known Secondary structure  T


SSGGG

TTT

GG
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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   300.........310.........320.........330.........340.........350.........360.........370.........
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Query Sequence  QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK
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Template Conservation 
 
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Template Sequence  QSIYGWRGA. . . . . . . . . . . . . . . . . . . . . . . . . . . QVENIQRFLNDFPGAETIRLEQNYRSTSN. . ILSAANALIENNN
Template Known Secondary structure  G


GGGT
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TSTT


B

SS
..TTST
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   251........ 260.........270.........280........ .290.........300.
 
   380.........390.........400.........410.........420.........430.........440.........450.........
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Query Sequence  TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE
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Template Sequence  GRLGKKLWTDGADGEPISLYCAFNELDEARFVVNR. . . . . . . . . . . . . IKTWQDNGGALAECAILYRSNAQSRVLEEALL
Template Known Secondary structure  T





B
SS


S
SS.............TT

GGGSSGGG
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   302.......310.........320.........330...... ...340.........350.........360........
 
   460.........470.........480.........490.........500.........510.........520.........530..
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Query Sequence  QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHET. . . . . . .
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Template Sequence  QASMPYRIYGGMRFFERQEIKDALSYLRLIVNRN. . . . . . . . . . . . . DDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQL
Template Known Secondary structure  TT


SSS
GGGS
TT.............
TTSS

S

TS
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   369370.........380.........390.........400.. .......410.........420.........430.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                           
      
Template Sequence  TLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTA
Template Known Secondary structure 
TT
S
TTTS
TSS
TTT
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   436...440.........450.........460.........470.........480.........490.........500.........510.....
 
   533......540.........550.........560.. .....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TWAMTVHKSQGSEFDHAALILPSQRTPVVT. . . . . . . . . . . . RELVY
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Template Sequence  TRQFSEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
Template Known Secondary structure  S



S
TGGG
S


S


TT




BTBBTTBGGGGSSTT
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   516...520.........530.........540.........550.........560.........570.........580.........590.....
 
   568.570.........580..
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Query Sequence  TAVTRARRRLSLYAD
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Template Sequence  VGVTRAMQKLTLTYA
Template Known Secondary structure  TT
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   601........610.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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