Job Description P04993 Confidence 100.00% Date Thu Jan 5 10:58:32 GMT 2012 Rank 1 Aligned Residues 538 % Identity 100% Template c1w36G_ PDB info PDB header:recombination Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; PDBTitle: recbcd:dna complex Resolution 3.1 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Q	K	Q	L	L	E	A	V	E	H	K	Q	L	R	P	L	D	V	Q	F	A	L	T	V	A	G	D	E	H	P	A	V	T	L	A	A	A	L	L	S	H	D	A	G	E	G	H	V	C	L	P	L	S	R	L	E	N	N	E	A	S	H	P	L	L	A	T	C	V	S	E	I	G	E	L	Q	N	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	Q	K	Q	L	L	E	A	V	E	H	K	Q	L	R	P	L	D	V	Q	F	A	L	T	V	A	G	D	E	H	P	A	V	T	L	A	A	A	L	L	S	H	D	A	G	E	G	H	V	C	L	P	L	S	R	L	E	N	N	E	A	S	H	P	L	L	A	T	C	V	S	E	I	G	E	L	Q	N	W
Template Known Secondary structure			T										T	T	S	S												S	S	S	S																	T	T						G	G	G	G	T	T	G	G	G	G	S	S	S					S	S			T	T		S	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	C	L	L	A	S	Q	A	V	S	R	G	D	E	P	T	P	M	I	L	C	G	D	R	L	Y	L	N	R	M	W	C	N	E	R	T	V	A	R	F	F	N	E	V	N	H	A	I	E	V	D	E	A	L	L	A	Q	T	L	D	K	L	F	P	V	S	D	E	I	N	W	Q	K	V	A	A	A	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	C	L	L	A	S	Q	A	V	S	R	G	D	E	P	T	P	M	I	L	C	G	D	R	L	Y	L	N	R	M	W	C	N	E	R	T	V	A	R	F	F	N	E	V	N	H	A	I	E	V	D	E	A	L	L	A	Q	T	L	D	K	L	F	P	V	S	D	E	I	N	W	Q	K	V	A	A	A	V	A
Template Known Secondary structure								S	T	T			S	S	S	S			S					S	S																		T	T	S			B															T	T				T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	R	I	S	V	I	S	G	G	P	G	T	G	K	T	T	T	V	A	K	L	L	A	A	L	I	Q	M	A	D	G	E	R	C	R	I	R	L	A	A	P	T	G	K	A	A	A	R	L	T	E	S	L	G	K	A	L	R	Q	L	P	L	T	D	E	Q	K	K	R	I	P	E	D	A	S	T	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	R	R	I	S	V	I	S	G	G	P	G	T	G	K	T	T	T	V	A	K	L	L	A	A	L	I	Q	M	A	D	G	E	R	C	R	I	R	L	A	A	P	T	G	K	A	A	A	R	L	T	E	S	L	G	K	A	L	R	Q	L	P	L	T	D	E	Q	K	K	R	I	P	E	D	A	S	T	L	H
Template Known Secondary structure			T	B	S								T	T	S	T															T		S	S	S								B	S	S												T					S	T	T			S					S		S				B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	G	A	Q	P	G	S	Q	R	L	R	H	H	A	G	N	P	L	H	L	D	V	L	V	V	D	E	A	S	M	I	D	L	P	M	M	S	R	L	I	D	A	L	P	D	H	A	R	V	I	F	L	G	D	R	D	Q	L	A	S	V	E	A	G	A	V	L	G	D	I	C	A	Y	A	N	A	G	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	L	.	.	.	.	.	.	.	.	.	.	.	H	A	G	N	P	L	H	L	D	V	L	V	V	D	E	A	S	M	I	D	L	P	M	M	S	R	L	I	D	A	L	P	D	H	A	R	V	I	F	L	G	D	R	D	Q	L	A	S	V	E	A	G	A	V	L	G	D	I	C	A	Y	A	N	A	G	F
Template Known Secondary structure		S			.	.	.	.	.	.	.	.	.	.	.		T	T	S			S		S						S	G	G	G		B											S		T	T									T	T	S					S	T	T	B						G	G	G	G	G	G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.												.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	E	R	A	R	Q	L	S	R	L	T	G	T	H	V	P	A	G	T	G	T	E	A	A	S	L	R	D	S	L	C	L	L	Q	K	S	Y	R	F	G	S	D	S	G	I	G	Q	L	A	A	A	I	N	R	G	D	K	T	A	V	K	T	V	F	Q	Q	D	F	T	D	I	E	K	R	L	L	Q	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	E	R	A	R	Q	L	S	R	L	T	G	T	H	V	P	A	G	T	G	T	E	A	A	S	L	R	D	S	L	C	L	L	Q	K	S	Y	R	F	G	S	D	S	G	I	G	Q	L	A	A	A	I	N	R	G	D	K	T	A	V	K	T	V	F	Q	Q	D	F	T	D	I	E	K	R	L	L	Q	S	G
Template Known Secondary structure													T	T	S						S	T	T	T	T					T	T			B							S	S			T	T									T	S							T	T	T	S	G	G	G			S	S	B			B			S	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	Y	I	A	M	L	E	E	A	L	A	G	Y	G	R	Y	L	D	L	L	Q	A	R	A	E	P	D	L	I	I	Q	A	F	N	E	Y	Q	L	L	C	A	L	R	E	G	P	F	G	V	A	G	L	N	E	R	I	E	Q	F	M	Q	Q	K	R	K	I	H	R	H	P	H	S	R	W	Y	E	G	R	P
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	Y	I	A	M	L	E	E	A	L	A	G	Y	G	R	Y	L	D	L	L	Q	A	R	A	E	P	D	L	I	I	Q	A	F	N	E	Y	Q	L	L	C	A	L	R	E	G	P	F	G	V	A	G	L	N	E	R	I	E	Q	F	M	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T										T	T	T									T				S	S	T	T					T	T						S		S	S	S	S	S	S										G	G	G	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	I	A	R	N	D	S	A	L	G	L	F	N	G	D	I	G	I	A	L	D	R	G	Q	G	T	R	V	W	F	A	M	P	D	G	N	I	K	S	V	Q	P	S	R	L	P	E	H	E	T	T	W	A	M	T	V	H	K	S	Q	G	S	E	F	D	H	A	A	L	I	L	P	S	Q	R	T	P	V	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	Q	P	S	R	L	P	E	H	E	T	T	W	A	M	T	V	H	K	S	Q	G	S	E	F	D	H	A	A	L	I	L	P	S	Q	R	T	P	V	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S				S		S	S		S				T	T	T	T	T	T			B	S								S	S			T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																									465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	L	V	Y	T	A	V	T	R	A	R	R	R	L	S	L	Y	A	D	E	R	I	L	S	A	A	I	A	T	R	T	E	R	R	S	G	L	A	A	L	F	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	E	L	V	Y	T	A	V	T	R	A	R	R	R	L	S	L	Y	A	D	E	R	I	L	S	A	A	I	A	T	R	T	E	R	R	S	G	L	A	A	L	F	S	S
Template Known Secondary structure											T	T	B	S	S								T	T															S					T	T
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.