Job Description P04993 Confidence 97.75% Date Thu Jan 5 10:58:32 GMT 2012 Rank 168 Aligned Residues 115 % Identity 21% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	S	V	I	S	G	G	P	G	T	G	K	T	T	T	V	A	K	L	L	A	A	L	I	Q	M	A	D	G	E	R	C	R	I	R	L	A	A	P	T	G	K	A	A	A	R	L	T	E	S	L	G	K	A	L	R	Q	L	P	L	T	D	E	Q	K	K	R	I	P	E	D	A	S	T	L	H	R	L	L
Query Conservation
Alig confidence																																	.	.	.												.	.
Template Conservation																																	.	.	.												.	.
Template Sequence		F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	.	.	.	G	L	V	A	A	D	V	Y	R	P	A	.	.	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V
Template Known Secondary structure									S	S	S	S	S	S	T	T	T										T	T	S				.	.	.		B						S	S	S		.	.	S											T	T							S	S				T	T
Template Predicted Secondary structure																																	.	.	.												.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.								.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.
Query Sequence		G	A	Q	P	G	S	Q	R	L	R	H	H	A	G	N	P	L	H	L	D	V	L	V	V	D	E	A	S	M	I	D	.	.	.	.	.	.	.	L	P	M	M	S	R	L	I	D	A	L	P	D	H	A	R	V	I	F	L
Query Conservation																																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.						T	T		S									S			S	S	T																		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions