Job Description P0AF67 Confidence 95.14% Date Thu Jan 5 11:25:24 GMT 2012 Rank 262 Aligned Residues 66 % Identity 23% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	A	T	V	I	Y	L	Y	G	D	L	G	A	G	K	T	T	F	S	R	G	F	L	Q	A	L	G	H	Q	G	N	V	K	S	P	T	Y	T	L	V	E	P	Y	T	L	D	N	L	M	V	Y	H	F	D	L	Y	R	L	A	D	P	E	E	L	E	F	M	G	I	R	D	Y	F	A	N	D	A	I	C
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	.	.	.	.	.	L	R	Q	L	L	D	R	Y	H	I	E
Template Known Secondary structure		S	S	S									T	T	S	S														T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S	T						.	.	.	.	.						G	G	G	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.
		106	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	W	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	G	N	P	Q
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions