Job Description P37047 Confidence 33.30% Date Thu Jan 5 11:54:38 GMT 2012 Rank 193 Aligned Residues 196 % Identity 17% Template c2veaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. Resolution 2.21 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																										.	.	.
Query SS confidence																								.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																										.	.	.
Query Sequence		T	K	M	A	Q	D	I	V	A	R	T	M	R	I	I	D	T	N	I	N	V	M	.	.	.	.	.	D	A	R	G	R	I	I	G	S	G	D	R	E	R	I	.	.	.	.	.	.	.	.	.	.	G	E	L	H	E	G	A	L	L	V	L	S	Q	G	R	V	V	D	I	D	D	A	V	A	R	.	.	.
Query Conservation																								.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																										.	.	.
Alig confidence																								.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation
Template Sequence		R	D	F	Y	D	V	I	V	E	E	V	R	R	M	T	G	F	D	R	V	M	L	Y	R	F	D	E	N	N	H	G	D	V	I	A	E	D	K	R	D	D	M	E	P	Y	L	G	L	H	Y	P	E	S	D	I	P	Q	P	A	R	R	L	F	I	H	N	P	I	R	V	I	P	D	V	Y	G	V	A	V	P
Template Known Secondary structure																			S									T	T	S											T	T	S				T	T					G	G	G	S												S					S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
																																	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	H	G	V	R	Q	G	I	N	L	P	L	R	L	E	G	E	I	V	G	V	I	G	L	T	G	E	.	.	.	.	.	P	E	N	L	R	K	Y	G	E	L	V	C	M	T	A	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		L	T	P	A	V	N	P	S	T	N	R	A	V	D	L	T	E	S	I	L	R	S	A	Y	H	C	H	L	T	Y	L	K	N	M	G	V	G	A	S	L	T	I	S	L	I	K	D	G	H	L	W	G	L	I	A	C	H	H	Q	T	P	K	V	I	P	F	E	L	R	K	A	C	E	F	F	G	R	V	V	F
Template Known Secondary structure				S	S			T	T	T	T						T	T		S	S	B														T		S										T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																								.	.														.
Query SS confidence																								.	.														.
Query Sequence		M	M	L	E	Q	S	R	L	M	H	L	L	A	Q	D	S	R	L	R	E	E	L	.	.	V	M	N	L	I	Q	A	E	E	N	T	P	A	.	L	T	E	W	A	Q	R	L	G	I	D	L	N	Q	P	R	V	V	A	I	V	E	V	D	S	G	Q	L	G	V	D	S	A	M	A	E	L	Q	Q	L	Q	N
Query Conservation																								.	.														.
Alig confidence																								.	.														.
Template Conservation
Template Sequence		S	N	I	S	A	Q	E	D	T	E	T	F	D	Y	R	V	Q	L	A	E	H	E	A	V	L	L	D	K	M	T	T	A	A	D	F	V	E	G	L	T	N	H	P	D	R	L	L	G	L	T	G	S	Q	G	A	A	I	C	F	G	E	K	L	I	L	V	G	E	T	P	D	E	K	A	V	Q	Y	L	L	Q
Template Known Secondary structure																																	S	S	S							T								T	T	T		S							T	T							S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	T	P	E	R	N	N	L	V	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	E	N	R	E	V	Q	D	V	F	F	T
Template Known Secondary structure						T	T			S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions