Job Description P37047 Confidence 42.95% Date Thu Jan 5 11:54:38 GMT 2012 Rank 170 Aligned Residues 120 % Identity 15% Template c2oolA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.											40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	M	A	Q	D	I	V	A	R	T	M	R	I	I	D	T	N	I	N	V	M	.	.	.	.	.	D	A	R	G	R	I	I	G	S	G	.	.	.	.	.	.	.	.	.	.	D	R	E	R	I	G	E	L	H	E	G	A	L	L	V	L	S	Q	G	R	V	V	D	I	D	D	A	V	A	R	H	L	H
Query Conservation																								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	A	C	W	I	A	A	S	E	V	R	R	I	T	G	F	D	R	I	K	V	Y	Q	F	A	A	D	W	S	G	Q	V	I	A	E	D	R	D	S	G	I	P	S	L	L	D	F	H	F	P	S	S	D	I	P	A	Q	S	R	A	L	Y	T	I	N	P	V	R	I	I	P	D	I	G	Y	R	P	S	P
Template Known Secondary structure																			S									T	T	S											T	T					T	T					G	G	G	S											S						S		T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
																																				73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	R	Q	G	I	N	L	P	L	R	L	E	G	E	I	V	G	V	I	G	L	T	G	E	.	P	E	N	L	R	K	Y	G	E	L	V	C	M	T	A	E	M	M	L	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		L	V	P	D	I	N	P	R	L	G	G	P	I	D	L	S	F	S	V	L	R	S	V	S	P	T	H	L	E	Y	M	V	N	M	G	M	H	A	A	M	S	I	S	I	V	R	D	N	R	L	W	G	M	I	S	C	H	N	L	T	P	R	F	V	S	Y	E	V	R	Q	A	C	E	L	I	A	Q	V	L	T
Template Known Secondary structure				S				T	T	T		S	S				T	T		T	T	B														T												T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		118	.	120	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	R	L	M	H	L	L	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	Q	I	G	V	L	E	E	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions