Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6I0
Confidence99.61%DateThu Jan 5 11:03:11 GMT 2012
Rank78Aligned Residues201
% Identity17%Templatec3lv8A_
PDB info PDB header:transferaseChain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE
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Template Sequence  NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT. . . . . . . . REPGGTLLAEKLRALVKEEHPGEELQDITELLLVY
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STTS
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   2.......10.........20.........30........ .40.........50.........60.........70...
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQ
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Template Sequence  AARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERELDRIE
Template Known Secondary structure  TTT
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TTTTT


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TTT
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   74.....80.........90.........100.........110.........120.........130.........140.........150...
 
   164.....170.........180.........190.........200.........210.........220.....
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Query Sequence  EKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKLA
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Template Sequence  KMD. . . . . . . . . . . . ISFFERARERYLELANSDDSVVMIDAAQ. SIEQVTADIRRALQDWLS
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TTTTS.
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   159160. ........170.........180......... 190.........200.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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