Job Description P0A6I0 Confidence 99.16% Date Thu Jan 5 11:03:11 GMT 2012 Rank 114 Aligned Residues 189 % Identity 17% Template c3crqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	P	V	I	T	I	D	G	P	S	G	A	G	K	G	T	L	C	K	A	M	A	E	A	L	Q	W	H	L	L	D	S	G	A	I	Y	R	V	L	A	L	A	A	L	H	H	H	V	D	V	A	S	E	D	A	L	V	P	L	A	S	H	L	D	V	R	F	V	S	T	N	G	N	L	E	V	I	L
Query Conservation
Alig confidence																																								.	.	.																																			.	.	.	.	.
Template Conservation																																								.	.	.																																			.	.	.	.	.
Template Sequence		S	L	P	P	A	I	F	L	M	G	P	T	A	A	G	K	T	D	L	A	M	A	L	A	D	A	L	P	C	E	L	I	S	V	D	S	A	L	.	.	.	I	Y	R	G	M	D	I	G	T	A	K	P	S	R	E	L	L	A	R	Y	P	H	R	L	I	D	I	R	D	P	A	E	S	Y	.	.	.	.	.
Template Known Secondary structure												S	T	T	S	S										T	T	S									T	T	T	.	.	.	T	B	T	T			T	T	T	T										S				S	S	S		B		T	T	S			.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.																																			.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence		E	G	E	D	V	S	G	E	I	R	T	Q	E	V	A	N	A	A	S	Q	V	A	A	F	P	R	V	R	E	A	L	L	R	R	Q	R	A	F	R	E	L	P	G	L	I	A	D	G	R	D	M	G	T	V	V	F	.	.	.	.	.	.	P	D	A	P	V	K	I	F	L	D	A	S	S	E	E	R	A	H
Query Conservation																																																										.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	A	E	F	R	A	D	A	L	A	A	M	A	K	A	T	A	R	G	R	I	P	L	L	V	G	G	T	M	L	Y	Y	K	A	L	L	E	G	L	P	Y	T	V	A	Q	L	A	I	A	P	E	Q	R	Q	V	L	H	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T								S														S										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		157	.	.	160	.																																						.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	M	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	E	K	G	F	S	V	N	F	E	R	L	L	A	E	I	K	E	R	D	D	R	D	R	N	R	A	V	A	P	L	V	P	A	A	D	A
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	A	Q	R	F	R	Q	M	L	E	Q	G	F	I	A	E	V	E	A	L	H	A	R	S	D	L	H	A	G	L	P	S	I	R	A	V	G	Y	R	Q	V	W	D	Y	L	D	G	K	L	S	Y	A	E	M	T	E	R	G	I	I	A	T	R	Q	L	A	K	R	Q	F	T	W	L	R	S	W	S	H	L
Template Known Secondary structure														T										T		T	T			T	T	S	T	G	G	G	S	T	T									T	T	S	S																										T		S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	D	S	T	T	L	S	I	E	Q	V	I	E	K	A	L	Q	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	W	M	D	S	L	A	G	D	N	L	P	R	A	L	R	Y	L	K	T	V
Template Known Secondary structure						T	T		S													T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions