Job Description P37677 Confidence 100.00% Date Thu Jan 5 11:56:51 GMT 2012 Rank 8 Aligned Residues 489 % Identity 18% Template c3gg4B_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	Q	Y	W	L	G	L	D	C	G	G	S	W	L	K	A	G	L	Y	D	R	E	G	R	E	A	G	V	Q	R	L	P	L	C	A	L	S	P	Q	P	G	W	A	E	R	D	M	A	E	L	W	Q	C	C	M	A	V	I	R	A	L	L	T	H	S	G	V	S	G	E	Q	I	V	G	I	G	I	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S	Y	F	I	G	V	D	V	G	T	G	S	A	R	A	G	V	F	D	L	Q	G	R	X	V	G	Q	A	S	R	E	I	T	X	F	K	P	K	A	D	F	V	E	Q	S	S	E	N	I	W	Q	A	V	C	N	A	V	R	D	A	V	N	Q	A	D	I	N	P	I	Q	V	K	G	L	G	F	D	A
Template Known Secondary structure													S	S									T	T														B		S	S	T	T																									T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.										.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	K	G	L	F	L	L	D	K	N	D	K	P	L	.	.	.	.	.	.	.	.	.	G	N	A	I	L	S	S	D	R	R	A	M	E	I	V	R	R	W	Q	E	D	G	I	P	E	K	L	Y	P	L	T	R	Q	T	L	W	T	G	H	P	V	S	L	L	R	W	L	K	E	H	E	P	E	R	Y	A
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence				.													.	.	.	.	.	.	.	.	.																								.	.
Template Conservation				.																																													.	.
Template Sequence		T	C	.	S	L	V	V	L	D	K	E	G	N	P	L	T	V	S	P	S	G	R	N	E	Q	N	V	I	V	W	X	D	H	R	A	I	T	Q	A	E	R	I	N	A	T	K	H	.	.	P	V	L	E	F	V	G	G	V	I	S	P	E	X	Q	T	P	K	L	L	W	L	K	Q	H	X	P	N	T	W	S
Template Known Secondary structure			S	.							T	T	S		B				S	T	T			T	T						T	T			T	T											T		.	.	G	G	G	G	G	G	T	T				T	T	S
Template Predicted Secondary structure				.																																													.	.
Template SS confidence
		81	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.									.	220	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.
Query Sequence		Q	I	G	C	V	M	M	T	H	D	Y	L	R	W	C	L	T	G	V	K	G	C	E	E	S	N	I	S	E	S	N	L	Y	N	M	S	L	G	E	Y	D	P	C	L	T	D	W	L	G	I	A	E	I	N	H	A	L	P	P	V	V	G	S	A	E	I	C	.	.	.	.	.	.	.	.	G	E	I	T	A
Query Conservation																																																																					.	.	.	.	.	.	.	.
Alig confidence																																																						.	.														.	.	.	.	.	.	.	.
Template Conservation																																																						.	.
Template Sequence		N	V	G	H	L	F	D	L	P	D	F	L	T	W	R	A	T	K	D	E	T	R	S	L	C	S	T	V	C	K	W	T	Y	L	G	H	E	D	R	W	D	P	S	Y	F	K	L	V	G	L	A	D	.	.	L	L	D	N	N	A	A	K	I	G	A	T	V	K	P	X	G	A	P	L	G	H	G	L	S	Q
Template Known Secondary structure																			S													S			B	T	T	T	T	B										T		G	G	.	.	G	G					T	T	T		S					T	T		B		T	T	S	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	A	A	L	T	G	L	K	A	G	T	P	V	V	G	G	L	F	D	V	V	S	T	A	L	C	A	G	I	E	D	E	F	T	L	N	A	V	M	G	T	W	A	V	T	S	G	I	T	R	G	L	R	D	G	E	A	H	P	Y	V	Y	G	R	Y	V	N	D	G	E	F	I	V	H	E	A	S	P	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	A	S	E	X	G	L	I	P	G	T	A	V	S	V	S	I	I	D	A	H	A	G	T	I	G	I	L	G	A	S	D	R	R	I	A	L	I	G	G	T	S	T	A	H	X	A	X	S	R	S	A	H	F	I	S	G	I	W	G	P	Y	Y	S	A	I	L	P	E	Y	W	L	N	E	G	G	Q	S	A
Template Known Secondary structure								T			T	T				B														T	T											S	S	S								S	S					T	T	S						T	S	S	S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.														.	.	.	.	320	.	.	.	.	.	.	.	.	.								330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																							.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																							.	.	.
Query Sequence		S	S	G	N	L	E	W	F	T	A	Q	W	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	I	S	F	D	E	I	N	Q	A	V	A	S	.	.	.	.	.	.	.	L	P	K	A	G	G	D	L	F	F	L	P	F	L	Y	G	S	N	A	G	L	E	.	.	.	M	T	S	G	F	Y	G	M	Q
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																							.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.																							.	.	.
Template Conservation
Template Sequence		T	G	A	L	I	D	H	I	I	Q	S	H	P	C	Y	P	A	L	L	E	Q	A	K	N	K	G	E	T	I	Y	E	A	L	N	Y	I	L	R	Q	X	A	G	E	P	E	N	I	A	F	L	T	N	D	I	H	X	L	P	Y	F	H	G	N	R	S	P	R	A	N	P	N	L	T	G	I	I	T	G	L	K
Template Known Secondary structure		S											S	T	T											T	T																S	S	G	G	G	S	G	G	G	G	T	T							T	T		B		T	T	T		B	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		361	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		A	I	H	T	R	A	H	.	.	.	L	L	Q	A	I	Y	E	G	V	V	F	S	H	M	T	H	L	N	R	M	R	E	R	F	T	D	V	H	T	L	R	V	T	G	G	P	A	H	S	D	V	W	M	Q	M	L	A	D	V	S	G	L	R	I	E	L	P	Q	V	E	E	T	G	C	F	G	A	A	L	A
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		L	S	T	T	P	E	D	X	A	L	R	Y	L	A	T	I	Q	A	L	A	L	G	T	R	H	I	I	E	T	X	N	Q	N	G	Y	N	I	D	T	X	X	A	S	G	G	G	T	K	N	P	I	F	V	Q	E	H	A	N	A	T	G	C	A	X	L	L	P	E	E	S	E	A	X	L	L	G	S	A	X	X
Template Known Secondary structure		S			S																												T	T	T											T	T	T	T													T	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470		.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		A	R	V	G	T	G	V	Y	H	N	F	S	E	A	Q	R	D	L	R	H	P	V	R	T	L	L	P	D	M	T	A	H	Q	.	L	Y	Q	K	K	Y	Q	R	Y	Q	H	L	I	A	A	L	Q	G	F	H	A	R	I	K	E
Query Conservation																																			.
Alig confidence																																			.																			.
Template Conservation																																																						.
Template Sequence		G	T	V	A	A	G	V	F	E	S	L	P	E	A	X	A	A	X	S	R	I	G	K	T	V	T	P	Q	T	N	K	I	K	A	Y	Y	D	R	K	Y	R	V	F	H	Q	X	Y	H	D	H	X	R	.	Y	Q	A	L	X	Q
Template Known Secondary structure						T	T	S	S	S	S																																											.
Template Predicted Secondary structure																																																						.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.		.	.	.	540	.	.