Job Description P69908 Confidence 99.77% Date Thu Jan 5 12:12:17 GMT 2012 Rank 186 Aligned Residues 347 % Identity 14% Template d2gsaa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L
Query Conservation
Alig confidence																																																															.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.
Template Sequence		D	G	N	R	Y	I	D	Y	V	G	T	W	G	P	A	I	C	G	H	A	H	P	E	V	I	E	A	L	K	V	A	M	E	K	G	T	S	F	G	A	P	C	A	L	E	N	V	L	A	E	M	V	N	D	A	V	P	S	I	E	M	.	.	.	.	.	.	V	R	F	V	N	S	G	T	E	A	C	M	A
Template Known Secondary structure		T	S						S	S	G	G	G	T	T	T	T	T		B	T													T	T		S			S	S																S	T	T		S		.	.	.	.	.	.					S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.														190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	.	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	K	R	M	I	E	A	C
Query Conservation																																.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.								.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	R	L	M	R	A	Y	T	G	R	D	K	.	.	.	.	.	.	.	.	.	.	I	I	K	F	E	G	C	Y	H	G	H	A	D	M	F	L	V	K	A	G	S	G	V	A	T	L	G	L	P	S	S	P	G	V	P	K	K	T	T	A	N	T	L	T	T	P	Y	N	D	L	E	A	V	K	A	L	F
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.					T	T					S		G	G	G		S	S								T	T			S		S	S	S						T	T						T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.											.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		199	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure				.	.	.																				.	.	.	.
Query SS confidence				.	.	.																				.	.	.	.
Query Sequence		D	E	.	.	.	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S
Query Conservation				.	.	.																				.	.	.	.
Alig confidence				.	.	.																				.	.	.	.													.	.	.	.	.	.															.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.															.	.	.	.	.
Template Sequence		A	E	N	P	G	E	I	A	G	V	I	L	E	P	I	V	G	N	S	G	F	I	V	P	D	A	G	F	L	E	G	L	R	E	I	T	L	E	H	D	.	.	.	.	.	.	A	L	L	V	F	D	E	V	M	T	G	F	R	I	.	.	.	.	.	A	Y	G	G	V	Q	E	K	F	G	V	T	P	D	L
Template Known Secondary structure		T	T	S	T	T	T								S	S	B		S	S	S		B				T	T												T	T	.	.	.	.	.	.								T	T	T	B	T	T	T	.	.	.	.	.	B	T	T						T	T				S
Template Predicted Secondary structure																																										.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	.	Y	Q	V	A
Query Conservation																																																																													.
Alig confidence																					.	.									.	.	.	.	.	.																																									.
Template Conservation																					.	.									.	.	.	.	.	.
Template Sequence		T	T	L	G	K	I	I	G	G	G	L	P	V	G	A	Y	G	G	K	.	.	R	E	I	M	Q	L	V	A	.	.	.	.	.	.	P	A	G	P	M	Y	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	I	K	T	L	E	L	L	R	Q	P	G	T	Y	E	Y	L	D	Q	I	T	K	R	L	S
Template Known Secondary structure						G	G	G	G	T	T	S									.	.					T	T	B	T	.	.	.	.	.	.	T	T	S	S	B					T	T	T	T																T	S	T	T
Template Predicted Secondary structure																					.	.									.	.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.										.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.
Query Sequence		A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	.	.	.	.	.	.	.	.	.	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M
Query Conservation																																													.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																							.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Template Sequence		D	G	L	L	A	I	A	Q	E	T	G	H	A	A	C	G	.	.	.	.	.	G	Q	V	S	G	M	F	G	F	F	F	T	E	G	P	V	H	N	Y	E	D	A	K	K	S	D	L	Q	K	F	S	R	F	H	R	G	M	L	E	Q	G	I	Y	.	.	.	.	.	.	.	.	.	L	A	P	S	Q	F	E
Template Known Secondary structure											T	T						.	.	.	.	.				T	T						S	S	S					S					T	T	S															T	T			.	.	.	.	.	.	.	.	.			S	S	T	T	S
Template Predicted Secondary structure																		.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.						.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.										400	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	F	T	S	L	A	H	T	E	E	D	I	D	A	T	L	A	A	A	R	T	V	M	S	A	L
Template Known Secondary structure							T	T																		T
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions