Job Description P69908 Confidence 99.94% Date Thu Jan 5 12:12:17 GMT 2012 Rank 81 Aligned Residues 312 % Identity 14% Template d2a7va1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.04

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	.	.	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K
Query Conservation																																																											.	.
Alig confidence																							.	.	.	.	.																				.	.	.	.									.	.																			.	.	.
Template Conservation																							.	.	.	.	.																				.	.	.	.																													.	.	.
Template Sequence		N	F	C	S	R	A	A	L	E	A	L	G	S	C	L	N	N	K	Y	S	E	.	.	.	.	.	G	V	D	E	I	E	L	L	C	Q	R	R	A	L	E	A	F	D	L	.	.	.	.	D	P	A	Q	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	L	A	V	Y	T	A	L	L	Q	P	.	.	.
Template Known Secondary structure													T	S	G	G	G	T					.	.	.	.	.			T														T	T		.	.	.	.		T	T	T								S	S															S	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.																				.	.	.	.																													.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.						.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	R	I	M	G	Y	K	L	N	P	K	T	G	L	I	D	Y	N	Q	L	A	L	T	A	R	L	F	R	P	R	L	I	I	A	G	T	S	A	.	Y	A	R	L	I	D	Y	A	R	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									B		T	T	T		S	B															S							S	S	.			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template SS confidence
																																142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																								.	.	.	.																				.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.																								.	.	.	.																				.
Template Sequence		R	E	V	C	D	E	V	K	.	.	.	.	.	.	A	H	L	L	A	D	M	A	H	I	S	G	L	V	A	A	K	V	I	P	S	P	F	.	.	.	.	K	H	A	D	I	V	T	T	T	T	H	K	T	L	R	G	A	R	S	.	G	L	I	F	Y	R	K	G	V	K	A	V	D	P	K	T	G	R	E
Template Known Secondary structure								T	T	.	.	.	.	.	.								G	G	G						T	T	S	S			G	G	.	.	.	.	G	T		S						S	S	G	G	G		S		S		.								S						T	T	T
Template Predicted Secondary structure										.	.	.	.	.	.																								.	.	.	.																				.
Template SS confidence
		222	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.					.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
								293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template Sequence		I	P	Y	T	F	E	D	R	I	N	F	A	V	F	P	.	.	.	.	.	.	.	.	.	.	.	.	S	L	Q	G	G	P	H	N	H	A	I	A	A	V	A	V	A	L	K	Q	A	C	T	P	M	F	R	E	Y	S	L	Q	V	L	K	N	A	R	A	M	A	D	A	L	L	E	R	G	.	Y	S	L	V
Template Known Secondary structure															T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T			S																		S																								T	T	.				G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.													.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.	.	.	.					.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																																					.	.								.	.	.	.
Query SS confidence																																																					.	.								.	.	.	.
Query Sequence		C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	.	.	I	V	V	M	R	I	M	.	.	.	.	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D
Query Conservation																																																					.	.								.	.	.	.
Alig confidence								.	.	.										.	.	.																															.	.								.	.	.	.
Template Conservation								.	.	.										.	.	.
Template Sequence		S	G	G	T	D	N	.	.	.	H	L	V	L	V	D	L	R	P	.	.	.	K	G	L	D	G	A	R	A	E	R	V	L	E	L	V	S	I	T	A	N	K	N	T	C	P	G	D	R	S	A	I	T	P	G	G	L	R	L	G	A	P	A	L	T	S	R	Q	F	R	E	D	D	F	R	R	V	V	D	F
Template Known Secondary structure		G	G	S		S	S	.	.	.	S							T	T	.	.	.	T	T													T	T									T	T				S	S	S		S						S						T	T
Template Predicted Secondary structure								.	.	.										.	.	.
Template SS confidence
		358	.	360	.	.	.				.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		441	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	A	S	L	K	Y	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	E	G	V	N	I	G	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions