Return to main results Retrieve Phyre Job Id

Job DescriptionP69908
Confidence100.00%DateThu Jan 5 12:12:17 GMT 2012
Rank21Aligned Residues373
% Identity15%Templated1kl1a_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution1.93

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90 .........100.........110..
Predicted Secondary structure 























.......




Query SS confidence 


















































. . . . . . .





















Query Sequence  DVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEY. . . . . . . PQSAAIDLRCVNMVADLWHAPA
Query Conservation                  
                       
  
       .......
    

   
  
  
 
 
 
Alig confidence 















.



.




























.......





















Template Conservation 


   
  
      . 
 
.    
  

 
 

    
   
  
        
               
 
 
   
Template Sequence  PQVFAAIEQERKRQHA. KIEL. IASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH
Template Known Secondary structure  .S
.
TT




TSGGGG



TTSSS



S
Template Predicted Secondary structure 
.

.

























Template SS confidence 















































































   910.........20.... .... .30.........40.........50.........60.........70.........80......
 
   113......120.........130.........140.........150.........160. ........170.........180... .....
Predicted Secondary structure 


















..





..



Query SS confidence 
















































. .





















. .




Query Sequence  PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP. . VQICWHKFARYWDVELREIPMR. . PGQLF
Query Conservation         
  
 
 


   
  


          
       
    ..

 
  

    
     

  ..     
Alig confidence 
......


















...........











..





















..




Template Conservation   ...... 
   


 
    
 

 ........... 


 

                   
          
     
Template Sequence  A. . . . . . NVQPHSGAQANMAVYFTVL. . . . . . . . . . . EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHV
Template Known Secondary structure  ......


SS
...........
TT

GGGT

GGGT
TTSS
B
TTT
S
Template Predicted Secondary structure  ......

...........






















Template SS confidence 















































































   87 ..90.........100...... ...110.........120.........130.........140.........
 
   189190.........200.........210.........220.........230.........240.........250.........260........
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  MDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVK
Query Conservation   
   
   
   
  

   


 

 



 


 
     
    

 





 

            
     

Alig confidence 























.

















......














....











Template Conservation   
 
 
           
      . 
    
  
  

   
......  
 

 
   
   ....           
Template Sequence  IDYDDVREKARLHRPKLIVAAASA. YPRIIDFAKFREIADEVG. . . . . . AYLMVDMAHIAGLVA. . . . AGLHPNPVPYAH
Template Known Secondary structure  B


S

SS.

S


T......

TTT....TTSS

STTT
S
Template Predicted Secondary structure 








.







......







....










Template SS confidence 















































































   150.........160.........170... ......180.........190. ........200...... ...210........
 
   269270.........280.........290.........300.........310.........320.........330.........340........
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  SISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQ
Query Conservation 


 
 

    
 
 
 
  

   
         


       
  

     
     
  

  
          
Alig confidence 














.


















..........


































Template Conservation      
  
   
  
.
                  ..........            
                      
Template Sequence  FVTTTTHKTLRGPRG. GMILCQEQFAKQIDKAIFP. . . . . . . . . . GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVD
Template Known Secondary structure  SSSTT


S
.
TT..........TT
SS

S
Template Predicted Secondary structure 









.


..........










Template SS confidence 















































































   219220.........230... ......240.........250.. .......260.........270.........280.......
 
   349350.........360.........370.........380.........390.........400.........410........ .420.....
Predicted Secondary structure 


































...
Query SS confidence 





































































. . .






Query Sequence  VAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDI. . . VVMRIMC
Query Conservation 

  
   
      

         
  
 
              
   
   
  
    

      ...  


 
Alig confidence 












.







.








.....
































...






Template Conservation      
   
   
.  
     .         .....             
   

 
     
           


  
Template Sequence  NAKRLASALQNEG. FTLVSGGT. DNHLLLVDL. . . . . RPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGT
Template Known Secondary structure  TT.
GGGS
.SSS
.....GGGT

T



TT
SS
TTT
S
Template Predicted Secondary structure 

.





.


.....
























Template SS confidence 















































































   288.290.........300 ........ .310....... ..320.........330.........340.........350.........360
 
   426 ...430.........440.........450.........460
Predicted Secondary structure 
....










Query SS confidence 
. . . .

































Query Sequence  R. . . . RGFEMDFAELLLEDYKASLKYLSDHPKLQGIAQQ
Query Conservation   ....   
    
  
  
   
  
   
        
Alig confidence 
....

































Template Conservation     
      
 
      
   
               
Template Sequence  AAVTTRGFGLEEMDEIAAIIGLVLKNVGSEQALEEARQR
Template Known Secondary structure  TT

T
TT
Template Predicted Secondary structure 











Template SS confidence 






































   361........370.........380.........390.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions