Return to main results Retrieve Phyre Job Id

Job DescriptionP69908
Confidence100.00%DateThu Jan 5 12:12:17 GMT 2012
Rank17Aligned Residues364
% Identity12%Templated1c4ka2
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Ornithine decarboxylase major domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50......... 60.........70.........80.........90..... ....100.........110.
Predicted Secondary structure 








.














.........



Query SS confidence 

















.



































. . . . . . . . .















Query Sequence  AFQIINDELYLDGNARQN. LATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAA. . . . . . . . . IDLRCVNMVADLWHAP
Query Conservation                
   .                    
  
       
    .........

   
  
  
 
 
Alig confidence 

















.



































.........















Template Conservation     

          

 


  
                       
       

 
    
 
 

    
   

 
Template Sequence  FFKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNAD
Template Known Secondary structure  TS




SSSTTTTTTTGGGS
SS


TTSGGG
BTTTTBTTT
S
Template Predicted Secondary structure 





































Template SS confidence 















































































   110.........120.........130.........140.........150.........160.........170.........180.........
 
   112.......120.........130.........140.........150.........160........ .170.........180.........
Predicted Secondary structure 




















.








.
Query SS confidence 
























































.




















.
Query Sequence  APKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHK. FARYWDVELREIPMRPGQLFM.
Query Conservation          
  
 
 


   
  


          
       
    

 
  
.
    
     

        .
Alig confidence 

......

















............


















.




















.
Template Conservation    ...... 
   


  
   
 
 ............   

 

  
  
 
       
 

 

 
       
  
Template Sequence  KT. . . . . . YFVLGGSSNANNTVTSAL. . . . . . . . . . . . VSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFI
Template Known Secondary structure  ......SS............

TT
TT

TTTT



TT

Template Predicted Secondary structure  ......

............



















Template SS confidence 















































































   190. ........200......... 210.........220.........230.........240.........250.
 
   190.........200.........210.........220.........230.........240.........250.
Predicted Secondary structure  ..................





















Query SS confidence  . . . . . . . . . . . . . . . . . .





























































Query Sequence  . . . . . . . . . . . . . . . . . . DPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLA
Query Conservation  ..................
   
   
   
  

   


 

 



 


 
     
    

 





 

   
Alig confidence  ..................




















.



















......













Template Conservation    
                              
     .
  
   

  
  

   
......  
 






   
Template Sequence  GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG. TYDGTIYNAHEVVKRIGHLC. . . . . . DYIEFDSAWVGYEQ
Template Known Secondary structure 
GGGS
TTTSST
S

BSSB.
TTS
GGGB......S
TT

GGG
Template Predicted Secondary structure 















.









......









Template SS confidence 















































































   252.......260.........270.........280.........290 .........300.........310 .........320....
 
   252.......260........ .270.........280.........290 .........300.........310..
Predicted Secondary structure 















........











...........












Query SS confidence 
















. . . . . . . .





















. . . . . . . . . . .





















Query Sequence  PFVAPDIVWDFRLPRVK. . . . . . . . SISASGHKFGLAPLGCGWVIWR. . . . . . . . . . . DEEALPQELVFNVDYLGGQIGT
Query Conservation           
     

........


 
 

    
 
 
 
  
...........
   
         


     
Alig confidence  ..














........





















...........










...........
Template Conservation  ..
           


       
    
 

 
    
   
                         ...........
Template Sequence  . . FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNL. . . . . . . . . . .
Template Known Secondary structure  ..SSGGGGGG
TTS




TTS

SS

TT

GGGTTSTT


...........
Template Predicted Secondary structure  ..































...........
Template SS confidence 















































































   325....330.........340.........350.........360.........370.........380.........390.
 
   313......320.........330.........340.........350.........360.........370
Predicted Secondary structure 















......................
Query SS confidence 

























































. . . . . . . . . . . . . . . . . . . . . .
Query Sequence  FAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGR. . . . . . . . . . . . . . . . . . . . . .
Query Conservation    
  

     
     
  

  
          

  
   
      

     ......................
Alig confidence  .
























































......................
Template Conservation  .  





   


  
      
 
          
   
  
                                   
Template Sequence  . FMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW
Template Known Secondary structure  .S
SS

STT
SSSS
STTGGGS
TT
GGGG
Template Predicted Secondary structure  .





































Template SS confidence 















































































   392.......400.........410.........420.........430.........440.........450.........460.........470
 
   371...... ..380.........390.........400.........410.........420.....
Predicted Secondary structure  .....................




....






















Query SS confidence  . . . . . . . . . . . . . . . . . . . . .






. . . .















































Query Sequence  . . . . . . . . . . . . . . . . . . . . . PDEGIPA. . . . VCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMC
Query Conservation  .....................    
  ....
 
              
   
   
  
    

        


 
Alig confidence  .....................






....




























.......











Template Conservation                       

 

 
               
  
      
   

  .......
      
    
Template Sequence  RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP. . . . . . . EKSDLNSILFLM
Template Known Secondary structure  B

TT
TTT

TT

TT

TT
SSTTTT
SS


TT


.......S
SS
Template Predicted Secondary structure 









































.......



Template SS confidence 















































































   471........480.........490.........500.........510.........520.........530. ........540...
 
   426...430.........440.........450.
Predicted Secondary structure 





Query SS confidence 

























Query Sequence  RRGFEMDFAELLLEDYKASLKYLSDH
Query Conservation      
    
  
  
   
  
   
Alig confidence 

























Template Conservation      
  

 


 

 

 
     
Template Sequence  TPAETPAKMNNLITQLLQLQRLIEED
Template Known Secondary structure 
TT

T
Template Predicted Secondary structure 






Template SS confidence 

























   544.....550.........560.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions