Job Description P69908 Confidence 99.74% Date Thu Jan 5 12:12:17 GMT 2012 Rank 195 Aligned Residues 332 % Identity 13% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E
Query Conservation
Alig confidence																																																			.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	E	K	D	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P	E	G	Y	I	S	.	.	.	.	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S	Y	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	S		G	G	G	T	S	S				T	T															G	G	G			S	S				.	.	.	.					S													T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.																				.
Query SS confidence																																																								.	.	.	.	.	.																				.
Query Sequence		A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	.	.	.	.	.	.	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.
Query Conservation																																																								.	.	.	.	.	.																				.
Alig confidence		.	.	.																																																				.	.	.	.	.	.																				.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	Y	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F	N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D	S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D
Template Known Secondary structure		.	.	.	S		S	S							S	S			T										T									B		S	S	S	S	B															S		S									S	S		T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.																																																		.	.	.	.														.
Query SS confidence		.	.																																																		.	.	.	.														.
Query Sequence		.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	.	.	.	.	S	I	S	A	S	G	H	K	F	G	L	A	P	.	L	G	C	G	W	V	I	W	R	D	E
Query Conservation		.	.																																																		.	.	.	.														.
Alig confidence		.	.																																																		.	.	.	.														.
Template Conservation
Template Sequence		E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A	F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S
Template Known Secondary structure									T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S			T	T														T		G	G	G										S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
							293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.								.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure		.	.	.	.	.																																												.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																												.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	.	.	.	.	.	.	.	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L
Query Conservation		.	.	.	.	.																																												.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	E	I	I	E	E	F	E	A	S	L	A	H	.	.	.	.	.	.	.	.	.	.	.	.	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A	D	V	F	V	T	A	A	K	E	N
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.						T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.													290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D
Query Conservation
Alig confidence			.					.	.	.	.	.														.	.	.	.	.	.																	.	.	.	.	.	.	.	.													.
Template Conservation			.					.	.	.	.	.														.	.	.	.	.	.																	.	.	.	.	.	.	.	.													.
Template Sequence		K	.	L	T	X	I	.	.	.	.	.	P	Y	F	G	G	F	F	T	F	I	P	T	D	.	.	.	.	.	.	K	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	.	.	.	.	.	.	.	.	I	P	S	A	K	G	I	R	V	A	I	C	.	G	V	G	E	E	K	I	P	K	L	V	Q	R
Template Known Secondary structure		T	.					.	.	.	.	.				S	S	S							S	.	.	.	.	.	.											T	T	T				.	.	.	.	.	.	.	.				S	S						S	T	.	T	S		T	T	T
Template Predicted Secondary structure			.					.	.	.	.	.														.	.	.	.	.	.																	.	.	.	.	.	.	.	.													.
Template SS confidence
		344		.	.	.	.						.	350	.	.	.	.	.	.	.	.	.	360	.							.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.									.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.
		441	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	A	S	L	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	F	Y	T	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions