Job Description P69908 Confidence 99.96% Date Thu Jan 5 12:12:17 GMT 2012 Rank 66 Aligned Residues 321 % Identity 15% Template c3qm2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium Resolution 2.25 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	.	S	S	E	A	C	M	L	G	G	M	A	M	K
Query Conservation																																																																				.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.							.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		N	F	S	S	G	P	A	M	L	P	A	E	V	L	K	L	A	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	A	E	E	A	E	Q	D	F	R	D	L	L	N	I	P	S	N	Y	K	.	.	.	.	V	L	F	C	H	G	G	G	R	G	Q	F	A	G	V	P	L	N	L	L
Template Known Secondary structure					S	S	S												T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T			T	T			.	.	.	.						S		T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.																	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N
Query Conservation																									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	A	P	Q	I	I	D	A	K	I	T	V	D	G	K	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	L	H	Y	C	P	N	E	T	I	D	G	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T									S	S											T	T	T	S												T	T							G	G	G					T	T		S						S			T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P
Query Conservation
Alig confidence					.	.									.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																		.													.	.	.	.
Template Conservation					.	.									.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																		.													.	.	.	.
Template Sequence		A	I	D	.	.	E	T	P	D	F	G	P	E	.	.	.	.	.	.	.	.	V	V	V	T	A	D	F	S	S	T	I	L	S	A	P	L	.	.	.	.	.	.	.	.	.	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	.	P	A	G	L	T	L	V	I	V	R	E	D	.	.	.	.
Template Known Secondary structure					.	.							T	T	.	.	.	.	.	.	.	.								T	T	T	T	T	S	S			.	.	.	.	.	.	.	.	.		G	G	G		S						T	T	T	T	T		.		T	T								G	G	.	.	.	.
Template Predicted Secondary structure					.	.									.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																		.													.	.	.	.
Template SS confidence
		158	.	160			.	.	.	.	.	.	.	.									.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	.	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I
Query Conservation																																											.
Alig confidence		.	.																																								.																																		.
Template Conservation		.	.																																																																										.
Template Sequence		.	.	L	L	G	K	A	H	E	S	C	P	S	I	L	D	Y	T	V	L	N	D	N	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	Q	G	G	V	A	A	M	H	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	Q	A	.	N	R	S	R
Template Known Secondary structure		.	.	G		S				T	T	S		G	G	G											S																T																						T		S	S					B		G	G	.	G	B		S
Template Predicted Secondary structure		.	.																																																																										.
Template SS confidence
				214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation
Alig confidence											.	.	.	.																												.	.	.	.	.
Template Conservation											.	.	.	.																												.	.	.	.	.
Template Sequence		M	N	V	P	F	Q	L	A	D	.	.	.	.	N	T	L	D	K	V	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	.	.	.	.	.	M	R	A	S	I	Y	N	A	M	P	I	E	G	V	K	A	L	T	D	F	M	I	D	F	E	R	R
Template Known Secondary structure		S							S	S	.	.	.	.	G	G	G											T	T					B			T	T	T		S	.	.	.	.	.							T	T	S
Template Predicted Secondary structure											.	.	.	.																												.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions