Job Description P69908 Confidence 99.88% Date Thu Jan 5 12:12:17 GMT 2012 Rank 122 Aligned Residues 291 % Identity 16% Template c3qi6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs); PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99 Resolution 1.91 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	.	.	.	.	W
Query Conservation																																																																													.	.	.	.
Alig confidence											.	.	.	.										.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation											.	.	.	.										.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	R	T	A	L	E	A	A	.	.	.	.	L	A	A	V	E	D	A	A	F	.	.	.	.	.	.	.	G	R	A	F	S	S	G	M	A	A	A	D	C	A	L	R	A	M	.	.	.	.	.	.	.	.	.	.	.	.	L	R	P	G	D	H	V	V	I	P	D	D	A	Y	G	G	T	F	R	L	I
Template Known Secondary structure											.	.	.	.					T	T		S		.	.	.	.	.	.	.					S	S													.	.	.	.	.	.	.	.	.	.	.	.			T	T							T	T
Template Predicted Secondary structure											.	.	.	.										.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.													.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S
Query Conservation
Alig confidence																			.	.	.	.	.	.																																											.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.																																											.	.	.	.	.	.
Template Sequence		D	K	V	F	T	G	W	N	V	E	Y	T	P	V	A	L	A	.	.	.	.	.	.	D	L	D	A	V	R	A	A	I	R	P	T	T	R	L	I	W	V	E	T	P	T	N	P	L	L	S	I	A	D	I	A	G	I	A	Q	L	G	A	D	S	S	.	.	.	.	.	.	A	K	V	L	V	D	N	T	F
Template Known Secondary structure				T	G	G	G	G	T								T	T	.	.	.	.	.	.											T	T								S	S		T	T	T																T	T	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																			.	.	.	.	.	.																																											.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	P	A	L	.	.	.	.	.	.	.	.	Q	Q	P	L	S	L	G	A	D	V	V	L	H	S	T	T	Y	I	G	G	H	S	D	V	V	G	G	A	L	V	T	N	D	E	E	L	D	Q	S	F	A	F	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	N	G	A	G	A	V	P	G	P	F	D
Template Known Secondary structure		T		T	T	T	.	.	.	.	.	.	.	.			G	G	G	G	T		S										S		S	S										S											.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.									.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.													.	.	.	.	.	.	240	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370														.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation								.	.																																																																			.	.	.
Template Sequence		A	Y	L	T	M	R	.	.	G	L	K	T	L	V	L	R	M	Q	R	H	S	E	N	A	A	A	V	A	E	F	L	A	E	H	P	A	I	S	T	V	L	Y	P	G	L	P	S	H	P	G	H	A	V	A	A	R	Q	M	R	G	F	G	G	M	V	S	V	R	M	R	A	G	R	T	.	.	.	A	A	E
Template Known Secondary structure								.	.			T	T																					T		T	T							T	T	S	T	T	S	T	T									S	S			S							T	T				.	.	.
Template Predicted Secondary structure								.	.																																																																			.	.	.
Template SS confidence
		248	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.													.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	S	E	R	L	R	L	R	G	W	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		Q	L	C	A	K	T	N	I	F	I	L	A	E	S	L	G	S	V	E	S	L	I	E	H	P	S	A	M	T	G	S	Q	L	E	V	P	D	D	L	V	R	L	S	V	G	I	.	.	.	.	E	D	V	A	D	L	L	D	D	L	K	Q	A	L
Template Known Secondary structure								S	S	S				S					S	S						T	T	T					S					T	T								S	.	.	.	.	S
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions