Job Description P69908 Confidence 99.59% Date Thu Jan 5 12:12:17 GMT 2012 Rank 225 Aligned Residues 346 % Identity 14% Template c3oksB_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis Resolution 1.80 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		D	G	N	A	R	Q	N	L	A	T	F	C	Q	.	.	.	.	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																											.																								.	.	.	.
Template Conservation																																													.																								.	.	.	.
Template Sequence		D	G	N	R	L	I	D	L	G	S	G	I	A	V	T	T	V	G	N	S	A	P	K	V	V	E	A	V	R	S	Q	V	G	D	F	T	H	T	C	F	M	V	T	.	P	Y	E	G	Y	V	A	V	C	E	Q	L	N	R	L	T	P	V	R	G	D	K	R	.	.	.	.	S	A	L	F	N	S	G	S	E
Template Known Secondary structure		T	S						S	S					T		T	T		T	T													T	T		S			T	T	T	T	S	.																S	S			S	S			.	.	.	.					S	S
Template Predicted Secondary structure																																													.																								.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.														.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence																																			.														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	.	.	.	.	.	.
Query Conservation																																			.														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.							.														.	.	.	.	.	.	.	.	.	.	.	.	.										.					.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																																											.
Template Sequence		A	V	E	N	A	V	K	I	A	R	S	H	T	H	K	P	A	.	.	.	.	.	.	.	.	.	.	V	V	A	F	D	H	A	Y	H	G	R	T	N	L	T	M	A	L	T	A	K	V	M	P	Y	K	D	G	F	G	P	F	A	P	E	I	Y	R	A	P	L	S	.	Y	P	F	R	D	A	E	F	G	K
Template Known Secondary structure																			.	.	.	.	.	.	.	.	.	.					T	T					S	S											T	T	T	T	T	T			S			S	S								.						G	G	G
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																																											.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.
													189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.													.	.	.	.	.	.															.
Template Conservation																																																													.	.	.	.	.	.															.
Template Sequence		E	L	A	T	D	G	E	L	A	A	K	R	A	I	T	V	I	D	K	Q	I	G	A	D	N	L	A	A	V	V	I	E	P	I	Q	G	E	G	G	F	I	V	P	A	D	G	F	L	P	T	L	L	D	W	C	R	K	N	D	.	.	.	.	.	.	V	V	F	I	A	D	E	V	Q	T	G	F	A	R	.
Template Known Secondary structure					T																	T		G	G	G								S	S	B	T	T	T	T		B				T	T												T	T	.	.	.	.	.	.								T	T	T	T	T	T	T	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.															.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L
Query Conservation
Alig confidence		.																					.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																					.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	T	G	A	M	F	A	C	E	H	E	G	I	D	P	D	L	I	V	T	A	.	.	G	I	A	G	G	L	P	L	S	A	V	T	G	R	A	E	I	M	D	S	P	H	V	S	G	L	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	Y	G	G	N	P	I	A	C	A	A	A	L	A	T	I	E
Template Known Secondary structure		.	T	S	S	S	S	G	G	G	T	T	T				S						.	.		T	T	T	T	S	S												T		S		T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S
Template Predicted Secondary structure		.																					.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.													.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		333	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.				.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																																								.	.	.
Query SS confidence								.																																																								.	.	.
Query Sequence		R	L	G	R	E	G	.	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	.	.	.	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A
Query Conservation								.																																																								.	.	.
Alig confidence								.																													.	.	.	.	.																							.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		T	I	E	S	E	G	L	V	A	R	A	Q	Q	I	E	K	I	M	K	D	R	L	G	R	L	Q	A	E	D	D	R	I	G	D	V	.	.	.	.	.	R	G	R	G	A	M	I	A	M	E	L	V	K	A	G	T	T	E	P	D	A	D	L	T	K	A	L	C	A	G	A	H	A	A	G	V	I	V	L	S
Template Known Secondary structure						T	T																								T	T					.	.	.	.	.				T	T							B	S	T	T	S			B															T	T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		C	.	.	.	.	.	G	T	Y	G	N	V	V	R	F	L	P	P	L	S	I	G	D	D	L	L	N	E	G	L	D	V	L	E	E	V	L	R
Template Known Secondary structure			.	.	.	.	.		T	T	S									T	T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		413						.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.