Phyre 2 alignment of P69908 with c3nraA

Job Description P69908
Confidence 99.82% Date Thu Jan 5 12:12:17 GMT 2012

Rank 162 Aligned Residues 314

% Identity 9% Template c3nraA_

PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution

Resolution 2.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D
Query Conservation
Alig confidence																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	I	R	D	L	L	A	P	R	L	A	A	F	T	G	A	P	V	D	A	R	D	G	.	.	L	I	I	T	P	G	T	Q	G	A	L	F	L	A	V	A	A	T	.	.	.	.	.	.	.	.	.	.	.	.	V	A	R	G	D	K	V	A	I	V	Q	P	D	Y	F	A	N	R	K	L	V	E	F	F	E
Template Known Secondary structure															T	S				T	T	T	S	.	.					S												T	T	.	.	.	.	.	.	.	.	.	.	.	.			T	T								S			T									T	T
Template Predicted Secondary structure																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.													.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

	175	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																			.	.	.
Query SS confidence												.	.	.	.	.																																			.	.	.
Query Sequence	V	E	L	R	E	I	P	M	R	P	G	.	.	.	.	.	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S
Query Conservation												.	.	.	.	.																																			.	.	.
Alig confidence												.	.	.	.	.																																			.	.	.													.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence	G	E	X	V	P	V	Q	L	D	Y	V	S	A	D	E	T	R	A	G	L	D	L	T	G	L	E	E	A	F	K	A	G	A	R	V	F	L	F	S	N	P	N	N	P	A	G	V	V	Y	S	A	E	E	I	G	Q	I	A	A	L	A	A	R	Y	G	.	.	.	.	.	.	A	T	V	I	A	D	Q	L	Y
Template Known Secondary structure								B				S	S			S	S			B											T	T								S	S		T	T	T																				T	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220

	247	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence	G	G	F	L	A	P	F	V	A	P	D	.	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I
Query Conservation												.
Alig confidence												.																																															.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.
Template Sequence	S	R	L	R	Y	A	G	A	S	Y	T	H	L	R	A	E	A	A	V	D	A	E	N	V	V	T	I	X	G	P	S	T	E	S	L	S	G	Y	R	L	G	V	A	F	G	S	R	A	I	I	A	R	X	E	K	L	Q	A	.	.	.	.	.	.	.	.	.	.	I	V	S	L	R	A	A	G	Y	S	Q	A
Template Known Secondary structure	T	T	S	B		T	T						G	G	G		T	T	S		G	G	G													G	G	G																					.	.	.	.	.	.	.	.	.	.			T	S	S	S						G
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.											.	280	.	.	.	.	.	.	.	.	.	290

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q
Query Conservation
Alig confidence									.																												.											.	.	.	.	.	.	.
Template Conservation									.																												.											.	.	.	.	.	.	.
Template Sequence	V	L	R	G	W	F	D	E	.	A	P	G	W	X	E	D	R	I	A	R	H	Q	A	I	R	D	E	L	L	H	V	L	R	G	E	G	.	V	F	A	R	T	P	Q	A	G	S	.	.	.	.	.	.	.	Y	L	F	P	R	L	P	K	L	A	V	A	P	A	E	F	V	K	I	L	R	L	Q	A	G	V
Template Known Secondary structure	G	G	G	G	T	T			.		T	T																									.		B					S	B	S	S	.	.	.	.	.	.	.					B				B	S	S
Template Predicted Secondary structure									.																												.											.	.	.	.	.	.	.
Template SS confidence
	292	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.								.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

	406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L	S
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence	V	V	T	P	G	T	E	F	S	P	H	T	A	D	S	V	R	L	N	F	S	Q	.	.	D	H	E	A	A	V	A	A	A	R	R	I	V	T	L	V	E	R	Y	R
Template Known Secondary structure					G	G	G	T		T	T		T	T	B							S	.	.																				B
Template Predicted Secondary structure																							.	.
Template SS confidence
	364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.			.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions