Job Description P69908 Confidence 99.78% Date Thu Jan 5 12:12:17 GMT 2012 Rank 181 Aligned Residues 324 % Identity 12% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	.	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K
Query Conservation																			.
Alig confidence																			.											.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																														.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	.	.	.	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	.	.	.	.	.	.	.	.	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A
Template Known Secondary structure				S																T	T	T					G	G	G	.	.	.					S	S														.	.	.	.	.	.	.	.				G	G	G	S								S			T
Template Predicted Secondary structure																														.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.														.	.	.	.	.																		.	.	.
Query SS confidence																					.														.	.	.	.	.																		.	.	.
Query Sequence		F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	.	F	M	D	P	K	R	M	I	E	A	C	D	E	.	.	.	.	.	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	.	.	.	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D
Query Conservation																					.														.	.	.	.	.																		.	.	.
Alig confidence																					.														.	.	.	.	.																		.	.	.															.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.
Template Sequence		V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	.	.	.	.	.	.	L	F
Template Known Secondary structure						T	T									B	G	G	G	T	T	B														T	T	T	S									S	S		T	T	T																				T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.							.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.										.	.	270	.	.	.	.	.	.		.		.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.										.		.														.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.										.		.														.	.
Query Sequence		M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	.	.	.	.	.	.	.	.	.	K	S	I	S	A	S	G	H	K	.	F	.	G	L	A	P	L	G	C	G	W	V	I	W	R	.	.	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L
Query Conservation																														.	.	.	.	.	.	.	.	.										.		.														.	.
Alig confidence																														.	.	.	.	.	.	.	.	.										.		.														.	.
Template Conservation
Template Sequence		L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L
Template Known Secondary structure							T	T	T	T		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S									S																S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.													.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	.	.	.	.	L	Q	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.														T					T	T	S	T	T																												T	S	T	T						.	.	.	.			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Template SS confidence
																376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.					.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.										.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		I	P	A	V	C	F	K	L	K	D	G	E	.	.	.	.	.	.	.	.	.	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation																																																																.	.
Template Sequence		A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I	L	P	.	.	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H
Template Known Secondary structure		S	S																			T	T	S																B					G	G	G	T				T	T			B							S	.	.
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.			500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		446	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	F	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions