Job Description P69908 Confidence 99.71% Date Thu Jan 5 12:12:17 GMT 2012 Rank 203 Aligned Residues 316 % Identity 16% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.
Query Sequence		A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	.	.	.	.	.	.	.	.	D	K	P	N	L	V	C	G	P	V	Q	I	C	W
Query Conservation																																																												.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	.	.	.	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	.	.	.	.	.	.	.	.	.	.	.	.	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y
Template Known Secondary structure																					G	G	G	.	.	.					S	S													.	.	.	.	.	.	.	.	.	.	.	.	S																S	S	S	S			G	G	G
Template Predicted Secondary structure																								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.													.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		167	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure						.	.	.	.	.	.																	.	.	.	.														.	.	.																			.	.	.
Query SS confidence						.	.	.	.	.	.																	.	.	.	.														.	.	.																			.	.	.
Query Sequence		H	K	F	A	.	.	.	.	.	.	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	.	.	.	.	L	F	M	D	P	K	R	M	I	E	A	C	D	.	.	.	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	.	.	.	E	F	P	Q	P	L	H	D	A	L	D	K	F
Query Conservation						.	.	.	.	.	.																	.	.	.	.														.	.	.																			.	.	.
Alig confidence						.	.	.	.	.	.																	.	.	.	.														.	.	.																			.	.	.
Template Conservation
Template Sequence		S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y
Template Known Secondary structure		T	T			S	S	S																T	T																T						T	T									S	S		T	T	T																			T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I
Query Conservation
Alig confidence			.	.	.	.	.	.														.	.																																						.																.	.	.	.	.
Template Conservation			.	.	.	.	.	.														.	.																																						.																.	.	.	.	.
Template Sequence		D	.	.	.	.	.	.	I	P	L	I	I	D	N	A	Y	G	X	P	F	.	.	P	N	I	I	Y	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K	I	G	L	P	G	X	R	T	G	I	I	V	A	.	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	.	.	.	.	.
Template Known Secondary structure		T	.	.	.	.	.	.								T	T		T	T	T	.	.	T			B		S								T	T							S	G	G	G	T		G	G	G								.																.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.														.	.																																						.																.	.	.	.	.
Template SS confidence
		238							.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.				.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	.	.	.	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D
Query Conservation																																																					.	.	.
Alig confidence		.	.	.																																																	.	.	.												.	.	.	.	.	.	.
Template Conservation		.	.	.																																																															.	.	.	.	.	.	.
Template Sequence		.	.	.	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	P	L	X	I	H	K	P	E	G	A	I	.	.	.	.	.	.	.	F	L	W	L	W	F	K	D
Template Known Secondary structure		.	.	.	T	S	S															T	S									T																				S	S	S	S	S								B	S	S	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure		.	.	.																																																															.	.	.	.	.	.	.
Template SS confidence
					304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.								.	.	.	.	370	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.								.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																					.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.
Query Sequence		P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	.	.	.	.	.	.	.	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L	S	D	H
Query Conservation																					.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																						.	.
Template Conservation																																																	.	.
Template Sequence		L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A	A	.	.	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V	V	R	E	L	Y	D	N
Template Known Secondary structure			S	S												T	T						G	G	G	S		T	T	S			T	T		G	G	G	G	S						S		S	.	.
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions