Job Description P69908 Confidence 99.95% Date Thu Jan 5 12:12:17 GMT 2012 Rank 71 Aligned Residues 338 % Identity 13% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.
Query Sequence		C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	.	.	.	.	.	.	.	.	.	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G
Query Conservation																																.	.	.	.	.	.	.	.	.
Alig confidence																								.	.							.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																								.	.																																				.	.	.	.	.	.
Template Sequence		S	E	N	F	V	P	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	.	.	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E	N	L	A	R	D	R	A	K	A	L	F	G	A	E	F	A	.	.	.	.	.	.	N	V	Q	P	H	S	G	A	Q	A	N	A	A	V	L
Template Known Secondary structure		T													T	S	G	G	G	G				.	.				T	T			S	S	S																					T		S			.	.	.	.	.	.					S	S
Template Predicted Secondary structure																								.	.																																				.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	.	.	.	.	.	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F
Query Conservation																																	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.																																											.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Template Sequence		H	A	L	.	.	.	.	.	.	.	.	.	.	.	.	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H	L	I	D	M	D	A	V	R	A	T	A	L	E	F	R	P	K	V	I	I	.	A
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.			T	T								G	G	G	T			G	G	G	T		T	T	S					S	S									T	T	T		S																S				.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Template SS confidence
		104	.	.													.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W
Query Conservation
Alig confidence																								.	.	.	.	.	.																									.	.	.	.												.							.
Template Conservation																								.	.	.	.	.	.																									.	.	.	.												.							.
Template Sequence		G	W	S	A	Y	P	R	V	L	D	F	A	A	F	R	S	I	A	D	E	V	G	.	.	.	.	.	.	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	V	P	.	.	.	.	H	A	D	V	V	S	T	T	V	H	T	.	L	G	G	G	R	S	.	G	L	I	V	G
Template Known Secondary structure				S	S			S															T	.	.	.	.	.	.								T	T	T						T	T	S	S			S	T	T	.	.	.	.	T		S									.					S		.
Template Predicted Secondary structure																								.	.	.	.	.	.																									.	.	.	.												.							.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.		.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.					.	360	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.
Query SS confidence																																																																							.	.	.	.
Query Sequence		R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	.	.	.	.	K	L	G	P	Y	E	F
Query Conservation																																																																							.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P	.	.	.	.	.	.	.	.	.	.	G	Q	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L	M	A	P	D	V	A	K	A	G	V	S	V
Template Known Secondary structure			G	G	G									T	T	.	.	.	.	.	.	.	.	.	.	T	T		S	S																	T	S																						S	S						T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.											.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.				420	.	.	.	.	.	.					.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.								.	.	.	.
Query SS confidence																																																								.	.	.								.	.	.	.
Query Sequence		I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	.	.	.	V	M	R	I	M	C	R	.	.	.	.	R	G	F	E	M	D	F	A	E	L	L	L
Query Conservation																																																								.	.	.								.	.	.	.
Alig confidence				.	.	.															.	.	.																																	.	.	.								.	.	.	.
Template Conservation				.	.	.															.	.	.
Template Sequence		V	S	.	.	.	G	G	T	D	V	H	L	V	L	V	D	L	R	D	.	.	.	S	P	L	D	G	Q	A	A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V	A
Template Known Secondary structure		G	G	.	.	.	G	S		S	S	S							T	T	.	.	.	S	S													T	T									T	T		S	S		T	T	T		S													T
Template Predicted Secondary structure				.	.	.															.	.	.
Template SS confidence
		310	.				.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	Y	K	A	S	L	K	Y	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	I	A	T	A	L	A	T	G	S	S
Template Known Secondary structure										S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions