Job Description P69908 Confidence 99.62% Date Thu Jan 5 12:12:17 GMT 2012 Rank 220 Aligned Residues 346 % Identity 11% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A
Query Conservation
Alig confidence																																																.	.	.	.	.																						.	.	.	.
Template Conservation																																																.	.	.	.	.																						.	.	.	.
Template Sequence		R	Q	E	I	A	E	A	I	A	D	Q	A	R	E	L	A	Y	Y	H	S	Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I	L	D	R	A	P	K	N	X	S	K	.	.	.	.	.	V	Y	F	G	L	G	G	S	D	A	N	E	T	N	V	K	L	I	W	Y	Y	.	.	.	.	N	N	I	L
Template Known Secondary structure																	S						T	T																	S		T	T				.	.	.	.	.					S	S																.	.	.	.				T
Template Predicted Secondary structure																																																.	.	.	.	.																						.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.													.	.	.	.	180	.	.	.	.	.	.	.	.	.	190														.	.	.	.	.	.	.	.
Predicted Secondary structure															.															.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence															.															.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		G	K	P	T	D	K	P	N	L	V	C	G	P	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	.	.	.	.	.	.	.	.	.	.	.	.	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	R	M	I	E	A	C	.	.	.	.
Query Conservation															.															.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence															.															.	.	.	.	.	.	.	.	.	.	.	.									.							.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																																		.
Template Sequence		G	R	P	E	K	K	K	I	I	S	R	W	R	G	Y	H	G	S	G	L	V	T	G	S	L	T	G	L	E	L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T	E	A	P	.	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V	A	H	C	V	A	E	L	E	A	L	I	E	R	E	G
Template Known Secondary structure		T		T	T								T	T					S	S							S			G	G	G	T	T	T	T	T		S		T	T							S	.		G	G	G		S		T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.													.	.	.	.	.	.												.	.	.	.
Template Conservation																																							.	.	.	.	.	.												.	.	.	.
Template Sequence		A	D	T	I	A	A	F	I	G	E	P	I	L	G	T	G	G	I	V	P	P	P	A	G	Y	W	E	A	I	Q	T	V	L	N	K	H	D	.	.	.	.	.	.	I	L	L	V	A	D	E	V	V	T	G	.	.	.	.	F	G	R	L	G	T	X	F	G	S	D	H	Y	G	L	E	P	D	I	I	T	I
Template Known Secondary structure		G	G	G								S	S	B	S	T	T	T		B				T	T													T	.	.	.	.	.	.								T	T	T	S	.	.	.	.	S	S	T	T	S	S	S							T				S
Template Predicted Secondary structure																																							.	.	.	.	.	.												.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.							.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		275	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure										.																																																					.
Query SS confidence										.																																																					.
Query Sequence		H	K	F	G	L	A	P	L	.	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	.	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y
Query Conservation										.																																																					.
Alig confidence										.									.	.																												.	.														.
Template Conservation																			.	.																												.	.
Template Sequence		A	K	G	L	T	S	A	Y	A	P	L	S	G	S	I	V	S	.	.	D	K	V	W	K	V	L	E	Q	G	T	D	E	N	G	P	I	G	H	G	W	T	Y	S	A	H	P	.	.	I	G	A	A	A	G	V	A	N	L	K	L	L	D	E	L	N	L	V	S	N	A	G	E	V	G	A	Y	L	N	A	T
Template Known Secondary structure			G	G	G	T	T	T	S	S									.	.																S		S				T	T	T	T			.	.																T	T
Template Predicted Secondary structure																			.	.																												.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.								.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.
Query Sequence		L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	.	.	.	.	.	.	.	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C
Query Conservation																																									.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.																	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																				.	.	.	.	.																																										.	.	.	.	.
Template Sequence		X	A	E	A	L	S	Q	H	A	N	V	G	D	V	R	G	E	G	.	.	.	.	.	L	L	C	A	V	E	F	V	K	D	R	D	S	R	T	F	F	D	A	A	D	K	I	G	P	Q	I	S	A	K	L	L	E	Q	D	K	I	I	A	R	A	.	.	.	.	.	X	P	Q	G	D	I	L	G	F	A	P
Template Known Secondary structure							T	T	S	T	T							S	S	.	.	.	.	.	S								S	B	T	T	T	T	B				G	G	G																					.	.	.	.	.		S	S	S	S
Template Predicted Secondary structure																				.	.	.	.	.																																										.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380						.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.						.	.	.	.	.	.	.	.	430	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	C	L	T	R	A	E	A	D	Q	V	V	E	G	T	L	R	A	V	K	A	V
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions