Phyre 2 alignment of P69908 with c3eucB

Job Description P69908
Confidence 99.85% Date Thu Jan 5 12:12:17 GMT 2012

Rank 140 Aligned Residues 294

% Identity 15% Template c3eucB_

PDB info PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution

Resolution 2.05 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L
Query Conservation
Alig confidence																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	A	L	R	A	K	L	K	E	V	X	Q	V	P	A	G	X	E	.	.	.	.	V	L	L	G	N	G	S	D	E	I	I	S	X	L	A	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	A	R	P	G	A	K	V	X	A	P	V	P	G	F	V	X	Y	A	X	S	A	Q	F	A	G	L	E	F
Template Known Secondary structure												T			T	T			.	.	.	.																		T	.	.	.	.	.	.	.	.	.	.	.	.			T	T								S												T	T
Template Predicted Secondary structure																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.													.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	.	.	.	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.										.	.	.	.	.	.														.	.
Template Conservation																																																										.	.	.	.	.	.														.	.
Template Sequence	V	G	V	P	L	R	A	D	F	T	L	D	R	G	A	X	L	A	A	X	A	E	H	Q	P	A	I	V	Y	L	A	Y	P	N	N	P	T	G	N	L	F	D	A	A	D	X	E	A	I	V	R	A	A	Q	G	S	V	.	.	.	.	.	.	C	R	S	L	V	V	V	D	E	A	Y	Q	P	.	.	F	A
Template Known Secondary structure							T	T																		S						S	S		T	T	T																T	B	T	T	S	.	.	.	.	.	.		B								T	T			.	.	S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.														.	.
Template SS confidence
	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.			.	.

	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L
Query Conservation
Alig confidence																																				.												.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																				.												.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence	Q	E	S	W	X	S	R	L	T	D	F	G	N	L	L	V	X	R	T	V	S	K	L	G	L	A	G	I	R	L	G	Y	V	A	G	.	D	P	Q	W	L	E	Q	L	D	K	V	.	.	.	.	.	.	.	.	.	.	.	.	R	P	P	Y	N	V	N	V	L	T	E	A	T	A	L	F	A	L	E	H	.
Template Known Secondary structure	S			S	G	G	G	G	G	T		T	T										T	T		S	S									.									G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	S		T	T		S													T		.
Template Predicted Secondary structure																																				.												.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250													.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E
Query Conservation
Alig confidence	.																																.	.	.	.	.													.	.	.	.	.	.	.																					.
Template Conservation	.																																.	.	.	.	.													.	.	.	.	.	.	.																					.
Template Sequence	.	V	A	V	L	D	E	Q	A	A	Q	L	R	A	E	R	S	R	V	A	E	G	X	A	A	H	G	G	V	T	V	F	.	.	.	.	.	P	S	A	A	N	F	L	L	A	R	V	P	.	.	.	.	.	.	.	D	A	A	Q	T	F	D	R	L	L	A	R	K	V	L	I	K	N	V	S	.	K	X	H
Template Known Secondary structure	.																								T	S	T	T					.	.	.	.	.			S	S	S							S	.	.	.	.	.	.	.												T	T							T	.	T	S
Template Predicted Secondary structure	.																																.	.	.	.	.													.	.	.	.	.	.	.																					.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.								.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.

	415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence	P	L	L	A	N	C	L	R	V	T	V	S	.	.	.	T	P	E	E	N	A	Q	F	L	E	A	F	A	A	S	L	Q
Template Known Secondary structure	G	G	G	T	T								.	.	.
Template Predicted Secondary structure													.	.	.
Template SS confidence
	337	.	.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions