Return to main results Retrieve Phyre Job Id

Job DescriptionP69908
Confidence99.97%DateThu Jan 5 12:12:17 GMT 2012
Rank56Aligned Residues319
% Identity13%Templatec3ecdC_
PDB info PDB header:transferaseChain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90.........100.........110.........120.........130.........140....
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  QTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR
Query Conservation                 
  
       
    

   
  
  
 
 
        
  
 
 


   
  


      
Alig confidence 




















.....






















......

















.......
Template Conservation   
  
  
  
        
 ..... 
   
          
 
   
...... 
   

  
      

.......
Template Sequence  ENIVSRAVLDAQGSVLTNKYA. . . . . EGYDEVEALAIERVKRLFNAGHA. . . . . . NVQPHSGAQANGAVMLAL. . . . . . .
Template Known Secondary structure 




TSGGGSS
T.....T


TT
S......


SS.......
Template Predicted Secondary structure 









.....






......






.......
Template SS confidence 















































































   40.........50.........60 .........70.........80... ......90.........100.
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  MEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH
Query Conservation      
       
    

 
  

    
     

        
   
   
   
  

   


 

 



 


Alig confidence  .....













.............



































.










Template Conservation  .....  


 

      .............            

   
          

    
 . 
   

  
 
Template Sequence  . . . . . AKPGDTVLGMSLFN. . . . . . . . . . . . . ALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSA. YPRKLDFARFR
Template Known Secondary structure  .....

TT



.............
B
TTT
SB


S
S
.
SS


Template Predicted Secondary structure  .....













.............

















.





Template SS confidence 















































































   114.....120....... ..130.........140.........150.........160... ......170....
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  DALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVD
Query Conservation   
     
    

 





 

            
     




 
 

    
 
 
 
  

   
         
Alig confidence 






......























....

















.
















...
Template Conservation   

   
......  
 

 

  
            .... 



  
  
 
 
  
.
 
              ...
Template Sequence  AIADSVG. . . . . . AKLMVDMAHIAGVIAAGRHANPVE. . . . HAHVVTSTTHKTLRGPRG. GFVLTNDEEIAKKINSA. . .
Template Known Secondary structure  TT......

TTTTTSS

GGG....T
SSSGGG
S
S
.S
...
Template Predicted Secondary structure 

......
















....












.

...
Template SS confidence 















































































   193...... 200.........210.........220... ......230.........240. ........250........
 
   305....310.........320.........330.........340.........350.........360.........370.........380....
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  YLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKD
Query Conservation 


       
  

     
     
  

  
          

  
   
      

         
  
 
    
Alig confidence  ............












































.









...








Template Conservation  ............        
 
  
                  

  
   
   
.  
       ...
        
Template Sequence  . . . . . . . . . . . . VGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG. VDLVTGGTDN. . . HLLLVDLRP
Template Known Secondary structure  ............



TSTT.
GGGS
SS...S
GG
Template Predicted Secondary structure  ............










.






...




Template SS confidence 















































































   259260.........270.........280.........290.........300... ......310... ......320..
 
   385....390.........400.........410........ .420..... ....430.........440.........450...
Predicted Secondary structure 





















.......







Query SS confidence 

































. . .






. . . .



























Query Sequence  GEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDI. . . VVMRIMC. . . . RRGFEMDFAELLLEDYKASLKYLSDHPK
Query Conservation            
   
   
  
    

      ...  


 
....    
    
  
  
   
  
   
 
Alig confidence  ...






























...






....



























Template Conservation  ... 
         
   

 
     
           



    
  
    
   

  
   
        
Template Sequence  . . . KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEALRTNPE
Template Known Secondary structure  ...GT

TT



TT
SS
TTT
S
TT

TT
TT
Template Predicted Secondary structure  ...
































Template SS confidence 











































































   329330.........340.........350.........360.........370.........380.........390.........400.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions