Phyre 2 alignment of P69908 with c3dydB

Job Description P69908
Confidence 99.79% Date Thu Jan 5 12:12:17 GMT 2012

Rank 178 Aligned Residues 319

% Identity 11% Template c3dydB_

PDB info PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	S	R	E	E	I	A	S	Y	Y	H	C	P	E	A	P	L	E	A	K	D	V	I	L	T	S	G	C	S	Q	A	I	D	L	C	L	A	V	L	.	.	.	.	.	.	.	.	.	.	.	.	A	N	P	G	Q	N	I	L	V	P	R	P	G	F	S	L	Y	K	T	L	A	E	S	M	G	I	E	V	K
Template Known Secondary structure												B	T	T	B				G	G	G					S														.	.	.	.	.	.	.	.	.	.	.	.			T	T								S			T									T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.													.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

	179	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure						.																																							.	.	.
Query SS confidence						.																																							.	.	.
Query Sequence	E	I	P	M	R	.	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	.	.	.	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V
Query Conservation						.																																							.	.	.
Alig confidence						.																																							.	.	.											.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence	L	Y	N	L	L	P	E	K	S	W	E	I	D	L	K	Q	L	E	Y	L	I	D	E	K	T	A	C	L	I	V	N	N	P	S	N	P	C	G	S	V	F	S	K	R	H	L	Q	K	I	L	A	V	A	A	R	Q	C	.	.	.	.	.	.	V	P	I	L	A	D	E	I	Y	G	D	M	V	F	S	D	C
Template Known Secondary structure						G	G	G	T	T													T	T								S	S		T	T	T																				T	.	.	.	.	.	.								T	T	T	T		B		S	S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	.	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R
Query Conservation																								.
Alig confidence																								.																									.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence	K	Y	E	P	L	A	T	L	S	T	D	V	P	I	L	S	C	G	G	L	A	K	R	W	L	V	P	G	W	R	L	G	W	I	L	I	H	D	R	R	D	I	F	G	N	E	I	R	.	.	.	.	.	D	G	L	V	K	L	S	Q	R	I	L	G	P	C	T	I	V	Q	G	A	L	K	S	I	L	C	R
Template Known Secondary structure					G	G	G	G		S	S									S	T	T	T	T	T		G	G	G											T	T	S	S						.	.	.	.	.													S
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G
Query Conservation
Alig confidence																																								.	.																																							.
Template Conservation																																								.	.																																							.
Template Sequence	T	P	G	E	F	Y	H	N	T	L	S	F	L	K	S	N	A	D	L	C	Y	G	A	L	A	A	I	P	G	L	R	P	V	R	P	S	G	A	M	.	.	Y	L	M	V	G	I	E	M	E	H	F	P	E	F	E	N	D	V	E	F	T	E	R	L	V	A	E	Q	S	V	H	C	L	P	A	T	C	F	.
Template Known Secondary structure	S																									T	S	T	T								B	T	T	.	.								G	G	G		T	T		S	S																			G	G	G	G	.
Template Predicted Secondary structure																																								.	.																																							.
Template SS confidence
	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

	414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation
Alig confidence	.	.												.	.
Template Conservation	.	.												.	.
Template Sequence	.	.	E	Y	P	N	F	I	R	V	V	I	T	.	.	V	P	E	V	M	M	L	E	A	C	S	R	I	Q	E	F	C	E	Q
Template Known Secondary structure	.	.	T		T	T						S		.	.	S
Template Predicted Secondary structure	.	.												.	.
Template SS confidence
			411	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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