Phyre 2 alignment of P69908 with c3dxvA

Job Description P69908
Confidence 99.80% Date Thu Jan 5 12:12:17 GMT 2012

Rank 172 Aligned Residues 357

% Identity 14% Template c3dxvA_

PDB info PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae

Resolution 2.21 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	.	.	.	.	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.														.																																		.	.	.	.
Template Conservation																																			.																																		.	.	.	.
Template Sequence	E	N	G	R	E	L	I	D	L	S	G	A	W	G	A	A	S	L	G	Y	G	H	P	A	I	V	A	A	V	S	A	A	A	A	.	N	P	A	G	A	T	I	L	S	A	S	N	A	P	A	V	T	L	A	E	R	L	L	A	S	F	P	G	E	G	T	H	K	.	.	.	.	I	W	F	G	H	S	G	S
Template Known Secondary structure	T	T	S						S	S	T	T	T	T	T		T	T		B	S														.	S		S		S		S	S	S	S															T	T	T		T	T	T			.	.	.	.					S	S
Template Predicted Secondary structure																																			.																																		.	.	.	.
Template SS confidence
	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.

	128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																			.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.																					.	.	.	.	.	.	.	.	.	.
Query Sequence	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	.	.	.	.	.	.	.	.	.	.	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E
Query Conservation																																			.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.							.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence	D	A	N	E	A	A	Y	R	A	I	V	K	A	T	G	R	S	G	.	.	.	.	.	.	.	.	.	.	V	I	A	F	A	G	A	Y	H	G	C	T	V	G	S	M	A	F	S	G	L	I	L	L	P	Y	P	D	P	Y	R	P	Y	R	N	D	P	T	G	D	A	I	L	T	L	L	T	E	K	L	A	A
Template Known Secondary structure															S				.	.	.	.	.	.	.	.	.	.					T	T					S	S					T	T											S	S	S		B	T	T	B	T	T	S													T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
	112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.											130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.													.	.	.	.	.	.												.	.	.	.
Template Conservation																																								.	.	.	.	.	.												.	.	.	.
Template Sequence	V	P	A	G	S	I	G	A	A	F	I	E	P	I	Q	S	D	G	G	L	I	V	P	P	D	G	F	L	R	K	F	A	D	I	C	R	A	H	G	.	.	.	.	.	.	I	L	V	V	C	D	E	V	K	V	G	.	.	.	.	L	A	R	S	G	R	L	H	C	F	E	H	E	G	F	V	P	D	I	L
Template Known Secondary structure	S		T	T									S	S	B	S	T	T	T	S	B				T	T												T	T	.	.	.	.	.	.								T	T	T		.	.	.	.	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S
Template Predicted Secondary structure																																								.	.	.	.	.	.												.	.	.	.
Template SS confidence
	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

	273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	L	G	K	G	L	G	G	G	L	P	L	S	A	V	I	A	P	A	E	I	L	.	.	.	.	.	.	.	.	.	.	.	.	D	C	A	S	A	F	A	M	Q	T	L	H	G	N	P	I	S	A	A	A	G	L	A	V	L	E	T	I	D	R	D	D	L	P	A	M	A	E	R	K	G	R	L	L	R	D
Template Known Secondary structure				G	G	G	G	T	T	S													.	.	.	.	.	.	.	.	.	.	.	.	T	S		S	S	S	S			T	T	T	T																		T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.													.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

	353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D
Query Conservation
Alig confidence																																																										.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence	G	L	S	E	L	A	K	R	H	P	L	I	G	D	I	R	G	R	G	L	A	C	G	M	E	L	V	C	D	R	Q	S	R	E	P	A	R	A	E	T	A	K	L	I	Y	R	A	Y	Q	L	G	L	V	V	Y	Y	V	.	.	.	.	.	G	M	N	G	N	V	L	E	F	T	P	P	L	T	I	T	E	T
Template Known Secondary structure										T	T								T	T										T	T	T	T																		T							.	.	.	.	.	S	T	T	S									T	T
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.						.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

	433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	I	H	K	A	L	D	L	L	D	R	A	F	S	E	L	S	A
Template Known Secondary structure															T	G	G	G
Template Predicted Secondary structure
Template SS confidence
	407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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