Job Description P69908 Confidence 99.90% Date Thu Jan 5 12:12:17 GMT 2012 Rank 103 Aligned Residues 357 % Identity 11% Template c3dodA_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis Resolution 1.90 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	.	.	.	.	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																							.																								.	.	.	.	.
Template Conservation																																												.																								.	.	.	.	.
Template Sequence		N	G	K	E	Y	Y	D	G	F	S	S	V	W	L	N	V	H	G	H	R	K	K	E	L	D	D	A	I	K	K	Q	L	G	K	I	A	H	S	T	L	L	G	.	M	T	N	V	P	A	T	Q	L	A	E	T	L	I	D	I	S	P	K	K	L	T	R	.	.	.	.	.	V	F	Y	S	D	S	G	A	E
Template Known Secondary structure		T	S						T	T					T		S	S		B	S													T	T		S					S	S	.	S																S		T	T				.	.	.	.	.					S	S
Template Predicted Secondary structure																																												.																								.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T
Query Conservation
Alig confidence															.	.	.	.																																					.	.	.
Template Conservation															.	.	.	.																																					.	.	.
Template Sequence		A	M	E	I	A	L	K	M	A	F	Q	Y	W	.	.	.	.	K	N	I	G	K	P	E	K	Q	K	F	I	A	M	K	S	Y	K	A	P	I	P	Y	V	Y	R	S	E	S	G	D	P	D	E	C	R	.	.	.	D	Q	C	L	R	E	L	A	Q	L	L	E	E	H	H	E	E	I	A	A	L	S	I	E
Template Known Secondary structure															.	.	.	.			T	T		T	T																		T	T	S	S	S								.	.	.															G	G	G
Template Predicted Secondary structure															.	.	.	.																																					.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		209	210		.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure				.										.	.	.	.
Query SS confidence				.										.	.	.	.
Query Sequence		F	G	.	V	T	Y	T	G	N	Y	E	F	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G
Query Conservation				.										.	.	.	.
Alig confidence				.										.	.	.	.													.	.	.	.	.	.															.	.																											.
Template Conservation																														.	.	.	.	.	.															.	.																											.
Template Sequence		S	M	V	Q	G	A	S	G	M	I	V	M	P	E	G	Y	L	A	G	V	R	E	L	C	T	T	Y	D	.	.	.	.	.	.	V	L	M	I	V	D	E	V	A	T	G	F	G	R	.	.	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	L	M	A	A	G	K	G	I	T	G	G	.	Y	L	P
Template Known Secondary structure		S	S			S	T	T	T						T	T												T	T	.	.	.	.	.	.								T	T	T	T	T	T	T	.	.	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	T	T	.	S	S
Template Predicted Secondary structure																														.	.	.	.	.	.															.	.																											.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y
Query Conservation
Alig confidence									.	.																											.	.
Template Conservation									.	.																											.	.
Template Sequence		I	A	V	T	F	A	T	.	.	E	D	I	Y	K	A	F	Y	D	D	Y	E	N	L	K	T	F	F	H	G	H	S	Y	T	G	N	.	.	Q	L	G	C	A	V	A	L	E	N	L	A	L	F	E	S	E	N	I	V	E	Q	V	A	E	K	S	K	K	L	H	F	L	L	Q	D	L	H	A	L	P	H	V
Template Known Secondary structure									.	.						T	T		S		G	G	G									T	T	T	T		.	.																	T	T																				T	T	S	T	T
Template Predicted Secondary structure									.	.																											.	.
Template SS confidence
		289	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.								.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence		E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	.	.	.	.	.	.	.	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L
Query Conservation																														.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																					.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template Sequence		G	D	I	.	.	.	.	.	R	Q	L	G	F	M	C	G	A	E	L	V	R	S	K	E	T	K	E	P	Y	P	A	D	R	R	I	G	Y	K	V	S	L	K	M	R	E	L	G	M	L	T	.	.	.	.	.	.	.	.	R	P	L	G	D	V	I	A	F	L	P	P	L	A	S	T	A	E	E	L	S	E
Template Known Secondary structure					.	.	.	.	.				T	T								S	B	T	T	T	T	B				G	G	G													T	T				.	.	.	.	.	.	.	.				T	T								T	T
Template Predicted Secondary structure					.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template SS confidence
		365	.	.						.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.									410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		437	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	E	D	Y	K	A	S	L	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	A	I	M	K	Q	A	I	H	E	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions