Job Description P69908 Confidence 99.87% Date Thu Jan 5 12:12:17 GMT 2012 Rank 127 Aligned Residues 370 % Identity 12% Template c3cbfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 Resolution 1.67 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	D	D	V	A	F	Q	I	I	N	D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G
Query Conservation
Alig confidence																																																										.																						.	.
Template Conservation																																																										.																						.	.
Template Sequence		I	Q	A	S	T	I	R	E	L	L	K	L	T	Q	R	P	G	I	L	S	F	A	G	G	L	P	A	P	E	L	F	P	K	E	E	A	A	E	A	A	A	R	I	L	R	E	K	G	E	V	A	L	Q	Y	S	P	.	T	E	G	Y	A	P	L	R	A	F	V	A	E	W	I	G	V	R	P	E	E	.	.
Template Known Secondary structure															T	S	T	T					S	S					G	G	G	S																					T	S				.	T	T														T	S		G	G	G	.	.
Template Predicted Secondary structure																																																										.																						.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E
Query Conservation
Alig confidence		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	V	L	I	T	T	G	S	Q	Q	A	L	D	L	V	G	K	V	F	.	.	.	.	.	.	.	.	.	.	.	.	L	D	E	G	S	P	V	L	L	E	A	P	S	Y	M	G	A	I	Q	A	F	R	L	Q	G	P	R	F	L	T	V	P	A	G	E	E	G	P	D	L	D	A	L	E	E	V	L
Template Known Secondary structure		.	.	.					S	S													.	.	.	.	.	.	.	.	.	.	.	.			T	T								S											T	T											T	T
Template Predicted Secondary structure		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.													.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																							.	.	.																																									.	.
Query SS confidence																							.	.	.																																									.	.
Query Sequence		A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	.	.	.	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	.	.	I	V	W	D	F	R	L	P	R	V	K	S	I	S
Query Conservation																							.	.	.																																									.	.
Alig confidence																							.	.	.															.	.	.	.	.	.																					.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		K	R	E	R	P	R	F	L	Y	L	I	P	S	F	Q	N	P	T	G	G	L	T	P	L	P	A	R	K	R	L	L	Q	M	V	M	E	R	G	.	.	.	.	.	.	L	V	V	V	E	D	D	A	Y	R	E	L	Y	F	G	E	A	R	L	P	S	L	F	E	L	A	R	E	A	G	Y	P	G	V	I	Y
Template Known Secondary structure							S							B	S		T	T	T			B																	T	.	.	.	.	.	.								T	T	T	T		B		S	S														T
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	S	F	S	K	V	L	S	P	G	L	R	V	A	F	A	V	A	H	P	E	A	L	Q	K	L	V	Q	A	K	Q	.	.	.	.	.	.	.	.	.	.	G	A	D	L	H	T	P	M	L	N	Q	M	L	V	H	E	L	L	K	E	G	F	S	E	R	L	E	R	V	R	R	V	Y	R	E	K	A	Q
Template Known Secondary structure					S	T	T	T	T		S	T	T																					.	.	.	.	.	.	.	.	.	.				S	S														T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.											.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		352	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																																															.
Query SS confidence											.	.																																															.
Query Sequence		Y	L	A	D	E	I	A	K	L	.	.	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	.	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G
Query Conservation											.	.																																															.
Alig confidence											.	.												.	.	.	.										.	.	.	.																			.																					.
Template Conservation																								.	.	.	.										.	.	.	.																																								.
Template Sequence		A	M	L	H	A	L	D	R	E	V	P	K	E	V	R	Y	T	R	P	K	G	G	.	.	.	.	M	F	V	W	M	E	L	P	K	.	.	.	.	G	L	S	A	E	G	L	F	R	R	A	L	E	E	N	V	A	F	V	P	G	G	P	F	F	A	N	G	G	G	E	N	T	L	R	L	S	Y	A	.	T
Template Known Secondary structure											S		T	T	S						S	B	S	.	.	.	.	S								T	.	.	.	.	T													T	T						S	G	G	G		T	T	S			T	T							S	.	S
Template Predicted Secondary structure																								.	.	.	.										.	.	.	.																																								.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.					.	.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	R	E	G	I	A	E	G	V	R	R	L	G	R	A	L	K	G	L	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions