Return to main results Retrieve Phyre Job Id

Job DescriptionP69908
Confidence99.71%DateThu Jan 5 12:12:17 GMT 2012
Rank202Aligned Residues354
% Identity12%Templatec2zy3A_
PDB info PDB header:lyaseChain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6970.........80.........90.........100.........110.........120.........130.........140........
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA
Query Conservation             
  
       
    

   
  
  
 
 
        
  
 
 


   
  


          
Alig confidence 


















..




















































......
Template Conservation                    
..              
       
       
  
 
   

      
     ......
Template Sequence  AAFLHEMVDGILGCNYPVP. . PRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGL. . . . . .
Template Known Secondary structure  T
S

SS..TT

TT
TTS
GGGSTTS......
Template Predicted Secondary structure 





..















......
Template SS confidence 















































































   119120.........130....... ..140.........150.........160.........170.........180.........190
 
   149150.........160.........170.. .......180...... ...190.........200.........210....... ..220..
Predicted Secondary structure 









..







.














...

Query SS confidence 























. .













.






























. . .




Query Sequence  GKPTDKPNLVCGPVQICWHKFARY. . WDVELREIPMRPGQ. LFMDPKRMIEACDENTIGVVPTFGVTYTGNY. . . EFPQP
Query Conservation 
       
    

 
  

   .. 
     

     .   
   
   
   
  

   


 

 
...


 
Alig confidence  .






















..













.






























...




Template Conservation  .
 


 
 
  
 
        
   
   
 
  
           
               
 



          
Template Sequence  . LKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLER
Template Known Secondary structure  .S
TT
S

TSTTSTTT


BGGGTSB

GGGG
TTSS
SSS
B


Template Predicted Secondary structure  .








































Template SS confidence 















































































   191........200.........210.........220.........230.........240.........250.........260.........
 
   223......230.........240.........250.........260.........270.........280. ........290.........300.
Predicted Secondary structure 






























.




Query SS confidence 


























































.



















Query Sequence  LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAP. LGCGWVIWRDEEALPQELVF
Query Conservation 

 
     
    

 





 

            
     




 
 

    
. 
 
 
  

   
      
Alig confidence 








....












....




























.



















Template Conservation 
        ....    

 
  
  ....               

 
 
 

  
 





 

     
       
Template Sequence  VRNIVAEHR. . . . PDLMILTDDVYGT. . . . FADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDK
Template Known Secondary structure  T
....TT

TTGG....GSSS



GGGSTTTTT
GGG

SS
S
Template Predicted Secondary structure 
....







....

























Template SS confidence 















































































   270........ .280.........290. ........300.........310.........320.........330.........340.
 
   302.... ...310.........320.........330.........340.........350.
Predicted Secondary structure 




..............................














Query SS confidence 




. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .












































Query Sequence  NVDYL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAA
Query Conservation     

..............................
       
  

     
     
  

  
          

 
Alig confidence 




..............................












































Template Conservation                                      
       
 
        
               
     
  
Template Sequence  LQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRET
Template Known Secondary structure  S
TTTT
S
GGG

TTTTTTGGG
SS

TT
Template Predicted Secondary structure 














Template SS confidence 















































































   342.......350.........360.........370.........380.........390.........400.........410.........420.
 
   352.......360.........370.........380........ .390.........400.. .... ...410......
Predicted Secondary structure 
















.............



.

.









Query SS confidence 




































. . . . . . . . . . . . .













.



.









Query Sequence  YLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDP. . . . . . . . . . . . . GYTLYDLSERLRLR. GWQV. PAFTLGGEAT
Query Conservation   
   
      

         
  
 
        .............      
   
   .
  
.    

    
Alig confidence 










.......


















.............













.



.




...

Template Conservation   
   
     .......   
 
  
 

 
        
      
     
      

 
 

 
 

  
...
 
Template Sequence  TLYRELGMPPL. . . . . . . RDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGF. . . GS
Template Known Secondary structure  TTTTTS


.......

TTB

S

S




SS...
T
Template Predicted Secondary structure 

.......





























...

Template SS confidence 















































































   422.......430.. .......440.........450.........460.........470.........480......... 490.
 
   417..420.........430.........440.........450
Predicted Secondary structure 






Query SS confidence 

































Query Sequence  DIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD
Query Conservation      


 
    
    
  
  
   
  
  
Alig confidence 








.























Template Conservation    
 




.
    
        
 
 
     
Template Sequence  NRPSGRASL. ANLNEYEYAAIGRALRKMADELYA
Template Known Secondary structure  TS
S.SSS
Template Predicted Secondary structure 


.



Template SS confidence 

































   492.......500 .........510.........520....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions