Job Description P69908 Confidence 99.98% Date Thu Jan 5 12:12:17 GMT 2012 Rank 40 Aligned Residues 365 % Identity 12% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L
Query Conservation
Alig confidence										.																								.	.	.	.	.																										.	.	.	.	.
Template Conservation										.																								.	.	.	.	.																										.	.	.	.	.
Template Sequence		H	A	D	P	V	I	T	L	.	T	A	G	P	V	N	A	Y	P	E	V	L	R	G	L	G	R	T	V	L	Y	D	Y	.	.	.	.	.	D	P	A	F	Q	L	L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	K	P	.	.	.	.	.	V	I	L	H	G	E	P	V	L	G	L	E	A
Template Known Secondary structure		T	S			S				.		S	S	S											T	T	S					T	T	.	.	.	.	.	S																		T	T		S	S			.	.	.	.	.				S	S		T
Template Predicted Secondary structure										.																								.	.	.	.	.																										.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																															.																																									.	.
Query SS confidence																															.																																									.	.
Query Sequence		G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	.	.	T	I	G	V	V	P	T	F
Query Conservation																															.																																									.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.													.																									.																.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence		A	A	A	S	L	I	.	.	.	.	.	.	.	.	.	.	.	S	P	D	D	V	V	L	N	L	A	S	G	V	Y	G	K	G	F	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	N	.	E	A	I	D	P	Q	A	V	A	D	M	L	K	A	H	P	E	I	T	V	V	S	V	C	H
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.		T	T								S	S															S									T	T	.	S															T	T								S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
		76	.	.	.	80	.												.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W
Query Conservation
Alig confidence																								.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.																.	.	.	.	.	.	.
Template Sequence		H	D	T	P	S	G	T	I	N	P	I	D	A	I	G	A	L	V	S	A	H	G	.	.	.	.	.	.	A	Y	L	I	V	D	A	V	S	S	F	G	G	M	K	.	.	.	.	.	.	.	T	H	P	E	D	C	K	A	D	I	Y	V	T	G	P	N	K	C	L	G	A	P	P	G	L	T	M	M	G	V
Template Known Secondary structure				G	G	G	T															T	T	.	.	.	.	.	.								T	T	T	B	T	T	B	S	.	.	.	.	.	.	.			G	G	G	T	T		S						S	S	S	T	T				S
Template Predicted Secondary structure																								.	.	.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		290	.	.	.	.	.	.	.	.										.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.
Query Sequence		R	D	E	E	A	L	P	Q	E	.	.	.	.	.	.	.	.	.	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L
Query Conservation											.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	R	A	W	A	K	M	K	A	N	P	L	A	P	R	A	S	M	L	S	I	V	D	W	E	N	A	W	S	R	D	K	P	F	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G	V	T	A	M
Template Known Secondary structure											T		T	T	S			S	S	T	T		S	G	G	G	T	T	T	T	S	T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.																									.
Query SS confidence																																												.																									.
Query Sequence		G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	.	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	.	R	G	F	E	M	D	F	A	E	L	L	L
Query Conservation																																												.																									.
Alig confidence			.																							.	.	.	.															.															.	.	.								.
Template Conservation			.																							.	.	.	.																														.	.	.
Template Sequence		G	.	L	S	V	W	A	A	S	D	S	I	A	S	P	T	T	T	A	V	R	T	P	D	.	.	.	.	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	T	L	G	K	.	.	.	L	T	R	I	G	H	M	G	P	T	A	Q	P	I	Y	A	I	A	A	L
Template Known Secondary structure		T	.			B	S	S	S	S	G	G	G	B		S	S								T	.	.	.	.	T																			B				G	G	G	T	T	T	.	.	.								G	G	G		S
Template Predicted Secondary structure			.																							.	.	.	.																														.	.	.
Template SS confidence
		291		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	Y	K	A	S	L	K	Y	L	S	D	H	P	K	L	Q	G	I	A	Q	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	L	G	G	A	M	N	A	A	G	R	K	L	A	I	G	K	G	I	E	A	A
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions