Job Description P69908 Confidence 99.82% Date Thu Jan 5 12:12:17 GMT 2012 Rank 165 Aligned Residues 366 % Identity 12% Template c2x5dD_ PDB info PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa Resolution 2.25 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.																										.
Query SS confidence																													.																										.
Query Sequence		V	A	F	Q	I	I	N	D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	.	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	.	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A
Query Conservation																													.																										.
Alig confidence																													.																										.																				.	.
Template Conservation																																																																											.	.
Template Sequence		N	I	T	A	E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	L	S	M	G	N	P	D	G	P	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	E	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	H	W	Y	R	D	R	Y	D	V	Q	.	.	I	D	P	E	S
Template Known Secondary structure															T							S						S																S	T	T			S				T	T																					.	.			T	T	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	.	P	G	Q	L	F	M	D	P	K	R	M	I	E	A
Query Conservation																																																																			.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	.	.	.	.	.	.	.	.	.	.	.	.	L	D	H	G	D	T	I	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	P	G	I	D	F	F	N	E	L	E	R	A	I	R	E
Template Known Secondary structure		S					S	S													.	.	.	.	.	.	.	.	.	.	.	.			T	T								S			T									T	T									S	T	T	S												T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.													.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																						.	.	.																																			.
Query SS confidence																						.	.	.																																			.
Query Sequence		C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	.	.	.	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	.	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S
Query Conservation																						.	.	.																																			.
Alig confidence																						.	.	.															.	.	.	.	.	.															.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		S	I	P	K	P	R	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	D	F	F	E	R	V	V	A	L	A	K	Q	Y	D	.	.	.	.	.	.	V	M	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	K	D	I	A	V	E	F	F	T
Template Known Secondary structure		S	S	S			S						S	S		T	T	T																				T	.	.	.	.	.	.								T	T	T	T		B		T	T						G	G	G	S	T	T	G	G	G	T
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	P	E	L	V	S	A	L	A	R	I	K	.	.	.	.	.	.	.	.	.	.	.	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	R	Q	Y	Q	Q	R	R	D	V	L
Template Known Secondary structure		S	T	T	T	T	T			S																					.	.	.	.	.	.	.	.	.	.	.		T	T		S	S	S													S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270												.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																																.								.
Query SS confidence																																																.								.
Query Sequence		A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	.	R	L	R	G	W	Q	V	.	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M
Query Conservation																																																.								.
Alig confidence														.	.	.	.	.	.																													.								.												.	.								.	.
Template Conservation														.	.	.	.	.	.																																																	.	.								.	.
Template Sequence		V	K	G	L	R	E	A	G	W	M	V	E	.	.	.	.	.	.	N	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	H	L	G	S	L	E	F	A	K	K	L	L	Q	D	A	K	V	S	V	S	P	G	I	G	F	G	D	Y	G	D	D	.	.	H	V	R	F	A	L	I	.	.	E	N	R
Template Known Secondary structure								T	T					.	.	.	.	.	.			S	B	S	S												T	T																				G	G	G	G		G	G	G	T	T	.	.								.	.	S
Template Predicted Secondary structure														.	.	.	.	.	.																																																	.	.								.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.							.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.			.	.	380
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	L	R	Q	A	V	R	G	I	K	A	M	F	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions