Job Description P69908 Confidence 99.83% Date Thu Jan 5 12:12:17 GMT 2012 Rank 153 Aligned Residues 343 % Identity 13% Template c2pb2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase; PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding Resolution 1.91 Å

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		53	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		D	G	N	A	R	Q	N	L	A	T	.	.	.	.	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.																														.	.																				.	.	.	.	.	.	.
Template Conservation																																													.	.																				.	.	.	.	.	.	.
Template Sequence		Q	G	K	E	Y	I	D	F	A	G	G	I	A	V	T	A	L	G	H	C	H	P	A	L	V	E	A	L	K	S	Q	G	E	T	L	W	H	T	S	N	V	F	T	.	.	N	E	P	A	L	R	L	G	R	K	L	I	D	A	T	F	A	E	R	.	.	.	.	.	.	.	V	L	F	M	N	S	G	T	E
Template Known Secondary structure		T							S	S					T		T	T		B	S													T	T						T	T	S		.	.															S	S		S		.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																																													.	.																				.	.	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																			.																											.	.	.	.	.	.
Query SS confidence																																			.																											.	.	.	.	.	.
Query Sequence		A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	.	.	.	.	.	.	F	M	D	P	K	R	M	I	E	A	C	D	E	N
Query Conservation																																			.																											.	.	.	.	.	.
Alig confidence														.	.	.	.																		.																											.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		A	N	E	T	A	F	K	L	A	R	H	Y	.	.	.	.	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H
Template Known Secondary structure														.	.	.	.					T		T	T								T	T					S	S							S	S						T	T	S	S	S			S							T	T											T	T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.													.	.	.	.	.	.															.	.
Template Conservation																																				.	.	.	.	.	.															.	.
Template Sequence		T	C	A	V	V	V	E	P	I	Q	G	E	G	G	V	Q	A	A	T	P	E	F	L	K	G	L	R	D	L	C	D	E	H	Q	.	.	.	.	.	.	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	.	.	T	G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G
Template Known Secondary structure									S			T	T	T	T	S																			T	.	.	.	.	.	.								T	T	T	T	T	T	T	.	.	T	S	S	S	S						T				S						G	G	G	T
Template Predicted Secondary structure																																				.	.	.	.	.	.															.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220							.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I
Query Conservation
Alig confidence						.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	F	P	.	.	V	S	A	M	L	T	T	Q	E	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	V	L	Q	G	I	H	T	K	R	Q	Q	F	V	Q	H	L	Q	A	I	D
Template Known Secondary structure		T	T	S		.	.												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																						S	S
Template Predicted Secondary structure						.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.																	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L
Query Conservation
Alig confidence											.	.	.	.	.														.	.																								.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.														.	.																								.	.	.	.	.	.	.
Template Sequence		E	Q	F	D	I	F	S	D	I	.	.	.	.	.	R	G	M	G	L	L	I	G	A	E	L	K	P	.	.	K	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	.	.	.	.	.	.	.	G	A	D	V	M	R	F	A	P	S	L	V	V	E	E	A	D	I	H	E	G
Template Known Secondary structure											.	.	.	.	.				T	T								G	.	.	G	G	T	T												T	T						S	.	.	.	.	.	.	.	S	T	T								T	T
Template Predicted Secondary structure											.	.	.	.	.														.	.																								.	.	.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.						.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.								.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		438	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	D	Y	K	A	S	L	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	R	F	A	Q	A	V	G	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions