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Job DescriptionP69908
Confidence99.80%DateThu Jan 5 12:12:17 GMT 2012
Rank171Aligned Residues360
% Identity14%Templatec2douA_
PDB info PDB header:transferaseChain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VAFQIINDELYLDGNARQNLATFCQTW. DDENVHKLMDLSINK. NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQA
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Template Sequence  LVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVG. . LDPRR
Template Known Secondary structure  TT



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   11........20.........30.........40.........50.........60.........70.........80... .....
 
   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEAC
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Template Sequence  EALALIGSQEGLAHLLLAL. . . . . . . . . . . . TEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLRED. GLADLKAVPEGV
Template Known Secondary structure  SSS............

TT
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TT

B
TT.SSB
GGGS
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Query Sequence  DENTIGVVPTFGVTYTG. . . NYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGH
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Template Sequence  WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHG. . . . . . LWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLS
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TTT




TT......

TTGGGBSSS



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   156...160.........170.........180.........190. ........200.........210.........220.........
 
   276...280.........290.........300.........310.........320.........330.........340.........350.....
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Query Sequence  KFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLAD
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Template Sequence  KSYNLAGFRLGFALGSEEALARLERVKGVI. . . . . . . . . . . DFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAE
Template Known Secondary structure  T
GGG


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   230.........240.........250......... 260.........270.........280.........290........
 
   356...360.........370.........380.........390.........400.........410.........420.........430.....
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Query Sequence  EIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAE
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Template Sequence  ALKGV. . LSLLPPRAT. . . . MYLWGRLPE. . . . GVDDLEFGLRLVERGVALAPGRG. FGPGGKGFVRIALV. . RPLEELL
Template Known Secondary structure  TTT..S



BS....S

T....T

TT
GGG.G
GGGTT

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   299300... ......310.. .......320. ........330.........340.... .....350........ .360.....
 
   436...440.....
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Query Sequence  LLLEDYKASL
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Template Sequence  EAAKRIREAL
Template Known Secondary structure  T
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   366...370.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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