Phyre 2 alignment of P69908 with c2c7tA

Job Description P69908
Confidence 100.00% Date Thu Jan 5 12:12:17 GMT 2012

Rank 34 Aligned Residues 321

% Identity 14% Template c2c7tA_

PDB info PDB header:transferase Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.

Resolution 2.1 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	E	R	K	F	A	K	A	F	A	D	F	N	G	V	P	Y	.	.	.	.	.	.	.	C	V	P	T	T	S	G	S	T	A	L	M	L	A	L	E	A	L	G	.	.	.	.	.	.	.	.	.	.	.	I	G	E	G	D	E	V	I	V	P	S	L	T	W	I	A	T	A	T	A	V	L	N	V	N	A
Template Known Secondary structure														T		S		.	.	.	.	.	.	.					S													T	T	.	.	.	.	.	.	.	.	.	.	.			T	T							S	S	S		T									T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.												.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.

	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A
Query Conservation
Alig confidence																																.	.	.																							.	.	.	.	.	.
Template Conservation																																.	.	.																							.	.	.	.	.	.
Template Sequence	L	P	V	F	V	D	V	E	A	D	T	Y	C	I	D	P	Q	L	I	K	S	A	I	T	D	K	T	K	A	I	I	.	.	.	P	V	H	L	F	G	S	M	A	N	M	D	E	I	N	E	I	A	Q	E	H	N	.	.	.	.	.	.	L	F	V	I	E	D	C	A	Q	S	H	G	S	V	W	N	N	Q
Template Known Secondary structure							B		T	T	T		S	B											T	T						.	.	.		B			T	T																T	.	.	.	.	.	.								T	T		T	T				T	T
Template Predicted Secondary structure																																.	.	.																							.	.	.	.	.	.
Template SS confidence
	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.												.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	.	.	.	.	.	.	.	.	.	.	.	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.																						.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.																						.
Template Sequence	R	A	G	.	.	.	.	T	I	G	D	I	G	A	F	S	C	Q	Q	G	K	V	L	T	A	G	E	G	.	G	I	I	V	T	K	N	P	R	L	F	E	L	I	Q	Q	L	R	A	D	S	R	V	Y	C	D	D	S	S	E	L	M	H	G	D	M	Q	L	V	K	K	G	D	I	Q	G	S	N	Y	C	L
Template Known Secondary structure		T	T	.	.	.	.	S	S	S	S								T	T	S	S	S		S	S	S		.						S													B	T	T					S		T	T	S			T	T		B	S						S	S				B
Template Predicted Secondary structure				.	.	.	.																						.
Template SS confidence
	176	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	.	.	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R
Query Conservation																																															.	.
Alig confidence																																															.	.
Template Conservation
Template Sequence	S	E	F	Q	S	A	I	L	L	D	Q	L	Q	E	L	D	D	K	N	A	I	R	E	K	N	A	M	F	L	N	D	A	L	S	K	I	D	G	I	K	V	M	K	R	P	P	Q	V	S	R	Q	T	Y	Y	G	Y	V	F	R	F	D	P	V	K	F	G	G	L	N	A	D	Q	F	C	E	I	L	R	E	K
Template Known Secondary structure													T	T																				T	T	S	T	T								T	T							S								G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

	403	.	.	.	.	.	.	410	.	.	.	.	.	.																																						.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	V	V	M	R	I	M	C	R	R	G	F	E	.	M	D	F	A	E	L	L	L	E	D	Y	K	A	S
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation
Template Sequence	L	N	M	G	T	F	Y	L	H	P	P	Y	L	P	V	H	K	N	P	L	F	C	P	W	T	K	N	R	Y	L	K	S	V	R	K	T	E	A	Y	W	R	G	L	H	Y	P	V	S	E	R	A	S	G	Q	S	I	V	I	H	H	A	I	L	L	A	E	P	S	H	L	S	L	L	V	D	A	V	A	E	L
Template Known Secondary structure		T			T	T	T								G	G	G		T	T			G	G	G		T	T	S													T										T	T	S						G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

	445	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	R	K	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	411	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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