Phyre 2 alignment of P69908 with c1oatB

Job Description P69908
Confidence 99.80% Date Thu Jan 5 12:12:17 GMT 2012

Rank 176 Aligned Residues 349

% Identity 11% Template c1oatB_

PDB info PDB header:aminotransferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	53	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence	D	G	N	A	R	Q	N	L	A	T	F	C	Q	.	.	.	.	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																						.	.																									.	.	.	.	.	.	.
Template Conservation																																							.	.																									.	.	.	.	.	.	.
Template Sequence	E	G	R	K	Y	F	D	F	L	S	S	Y	S	A	V	N	Q	G	H	C	H	P	K	I	V	N	A	L	K	S	Q	V	D	K	L	T	L	T	.	.	S	R	A	F	Y	N	N	V	L	G	E	Y	E	E	Y	I	T	K	L	F	N	Y	H	K	.	.	.	.	.	.	.	V	L	P	M	N	T	G	V	E
Template Known Secondary structure	T							S	S					T		T	T		B	T													T	T		S			.	.		T	T	S			S	S													T		S		.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																																							.	.																									.	.	.	.	.	.	.
Template SS confidence
	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.								.	.	.	.	140	.	.	.	.

	129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																		.																												.	.	.	.	.	.
Query SS confidence																																		.																												.	.	.	.	.	.
Query Sequence	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	.	.	.	.	.	.	M	D	P	K	R	M	I	E	A	C	D	E	N
Query Conservation																																		.																												.	.	.	.	.	.
Alig confidence														.	.																			.																												.	.	.	.	.	.
Template Conservation														.	.
Template Sequence	A	G	E	T	A	C	K	L	A	R	K	W	G	.	.	Y	T	V	K	G	I	Q	K	Y	K	A	K	I	V	F	A	A	G	N	F	W	G	R	T	L	S	A	I	S	S	S	T	D	P	T	S	Y	D	G	F	G	P	F	M	P	G	F	D	I	I	P	Y	N	D	L	P	A	L	E	R	A	L	Q	D	P
Template Known Secondary structure														.	.			T	T				T	T								T	T					S	S					T	T								T	T	S		S			S	S						T	T									T	T	S	T
Template Predicted Secondary structure														.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.													.	.	.	.	.	.												.	.	.	.
Template Conservation																																				.	.	.	.	.	.												.	.	.	.
Template Sequence	N	V	A	A	F	M	V	E	P	I	Q	G	E	A	G	V	V	V	P	D	P	G	Y	L	M	G	V	R	E	L	C	T	R	H	Q	.	.	.	.	.	.	V	L	F	I	A	D	E	I	Q	T	G	.	.	.	.	L	A	R	T	G	R	W	L	A	V	D	Y	E	N	V	R	P	D	I	V	L	L	G	K
Template Known Secondary structure	T								S	S	B	T	T	T	T		B				T	T													T	.	.	.	.	.	.								T	T	T	T	.	.	.	.	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S						G
Template Predicted Secondary structure																																				.	.	.	.	.	.												.	.	.	.
Template SS confidence
	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

	277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	S	G	G	L	Y	P	V	S	A	V	L	C	D	D	D	I	M	L	T	I	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	H	G	S	T	Y	G	G	N	P	L	G	C	R	V	A	I	A	A	L	E	V	L	E	E	E	N	L	A	E	N	A	D	K	L	G	I	I	L	R	N	E
Template Known Secondary structure	G	G	G	T	T	S	S													T	T	S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S			S	S	T	T																		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.														.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

	357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L
Query Conservation
Alig confidence							.																		.	.	.	.																										.	.	.	.	.	.	.
Template Conservation							.																		.	.	.	.																										.	.	.	.	.	.	.
Template Sequence	L	M	K	L	P	S	.	D	V	V	T	A	V	R	G	K	G	L	L	N	A	I	V	I	.	.	.	.	K	E	T	K	D	W	D	A	W	K	V	C	L	R	L	R	D	N	G	L	L	A	K	P	T	.	.	.	.	.	.	.	H	G	D	I	I	R	F	A	P	P	L	V	I	K	E	D	E	L	R	E
Template Known Secondary structure		T	T	S		T	.	T	T								T	T							.	.	.	.			B	T	T	B												T	T					B	S	.	.	.	.	.	.	.	S	S	S								T	T
Template Predicted Secondary structure							.																		.	.	.	.																										.	.	.	.	.	.	.
Template SS confidence
	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.								.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.

	437	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	I	E	I	I	N	K	T	I	L	S
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
	428	.	430	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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