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Job DescriptionP69908
Confidence99.94%DateThu Jan 5 12:12:17 GMT 2012
Rank80Aligned Residues378
% Identity12%Templatec1c4kA_
PDB info PDB header:lyaseChain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50...... ...60.........70.........80.........90..... ....100........
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Query Sequence  DDVAFQIINDELYLDGNA. RQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAA. . . . . . . . . IDLRCVNMVADLW
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Template Sequence  FKSLKEYVSRYLIQFDCPGHQGGQYY. . . . RKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVY
Template Known Secondary structure  TS




SSSTTTTTTTG....GGS
SS


TTSGGG
BTTTTBTT
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   111........120.........130...... ...140.........150.........160.........170.........180......
 
   109110.........120.........130.........140.........150.........160........ .170.........180.......
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Query Sequence  HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHK. FARYWDVELREIPMRPGQL
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Template Sequence  NADKT. . . . . . YFVLGGSSNANNTVTSAL. . . . . . . . . . . . VSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY
Template Known Secondary structure  T
S......SS............

TT
TT

TTTT



TT
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   187..190. ........200......... 210.........220.........230.........240........
 
   188. 190.........200.. .......210.........220.........230.........240.......
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Query Sequence  FM. . . . . . . . . DPKRMIEACDENT. . . . . . . . . . IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASG.
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Template Sequence  GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG. TYDGTIYNAHEVVKRIGHLC. . . . . . DYIEFDSAWVG
Template Known Secondary structure 


GGGS
TTTSST
S

BSSB.
TTS
GGGB......S
TT

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   249250.........260.........270.........280.........290 .........300.........310 .........320.
 
   248.250.........260........ .270.........280.........290... ......300.........310.....
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Query Sequence  . GFLAPFVAPDIVWDFRLPRVK. . . . SISASGHKFGLAPLGCGWVIWRDEE. . . . . . . ALPQELVFNVDYLGGQIGTFAI
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Template Sequence  YEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPM
Template Known Secondary structure  GGGSSGGGGGG
TTS




TTS

SS

TT

GGGTTSTT


S
SS

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   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   316...320.........330.........340.........350.........360.........370
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Query Sequence  NFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGR. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  . . . . . . . . YAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFE
Template Known Secondary structure  ........STT
SSSS
STTGGGS
TT
GGGGB

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   402.......410.........420.........430.........440.........450.........460.........470...
 
   371........380..... ....390.........400.........410.........420........
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Query Sequence  . . . . . . . . . . . . . . . . . . PDEGIPAVCFKLKDG. . . . EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRG
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Template Sequence  KGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP. . . . . . . EKSDLNSILFLMTPA
Template Known Secondary structure  TT
TTT

TT

TT

TT
SSTTTT
SS


TT


.......S
SS

TT
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   474.....480.........490.........500.........510.........520.........530. ........540......
 
   429430.........440.........450.........460
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Query Sequence  FEMDFAELLLEDYKASLKYLSDHPKLQGIAQQ
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Template Sequence  ETPAKMNNLITQLLQLQRLIEEDAPLKQVLPS
Template Known Secondary structure 

TT
B
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   547..550.........560.........570........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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