Job Description Q46893 Confidence 99.95% Date Thu Jan 5 12:35:35 GMT 2012 Rank 35 Aligned Residues 211 % Identity 12% Template c2y6pC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	V	V	P	A	A	G	F	G	R	R	M	Q	T	E	C	P	K	Q	Y	L	S	I	G	N	Q	T	I	L	E	H	S	V	H	A	L	L	A	H	P	R	V	K	R	V	V	I	A	I	S	P	G	D	S	R	F	A	Q	L	P	L	A	N	H	P	Q	I	T	V	V	D	G	G	D	E	R	A	D	S
Query Conservation
Alig confidence																.	.	.																																								.	.	.	.	.
Template Conservation																.	.	.																																								.	.	.	.	.
Template Sequence		A	V	I	I	P	A	R	L	G	S	T	R	L	K	.	.	.	E	K	P	L	K	N	L	L	G	K	P	L	I	R	W	V	V	E	G	L	V	K	T	G	E	R	V	I	L	A	T	D	S	E	R	V	K	E	V	.	.	.	.	.	V	E	D	L	C	E	V	F	L	T	P	S	D	L	P	S	G	S	D
Template Known Secondary structure									S			S	S	S	T	.	.	.	T	G	G	G	S			T	T													T	T	T	S							S								.	.	.	.	.		T	T	T	S							T	T		S	S
Template Predicted Secondary structure																.	.	.																																								.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.																									.	.	.
Query SS confidence																																																	.	.	.	.	.	.																									.	.	.
Query Sequence		V	L	A	G	L	K	A	A	G	D	A	Q	W	V	L	V	H	D	A	A	R	P	C	L	H	Q	D	D	L	A	R	L	L	A	L	S	E	T	S	R	T	G	G	I	L	A	A	.	.	.	.	.	.	P	V	R	D	T	M	K	R	A	E	P	G	K	N	A	I	A	H	T	V	D	R	N	G	.	.	.
Query Conservation																																																	.	.	.	.	.	.																									.	.	.
Alig confidence																																																	.	.	.	.	.	.																									.	.	.
Template Conservation
Template Sequence		R	V	L	Y	V	V	R	D	L	D	V	D	L	I	I	N	Y	Q	G	D	E	P	F	V	Y	E	E	D	I	K	L	I	F	R	E	L	E	K	G	E	R	V	V	T	L	A	R	K	D	K	E	A	Y	E	R	P	E	D	V	K	V	V	L	D	R	E	G	Y	A	L	Y	F	S	R	S	P	I	P	Y	F
Template Known Secondary structure								T	T				S							T	T																			T		S									S	T	T	T	T		T	T	S							T	T	S	B						S	S			S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																				.
Query SS confidence		.	.	.	.	.	.	.																																				.
Query Sequence		.	.	.	.	.	.	.	L	W	H	A	L	T	P	Q	F	F	P	R	E	L	L	H	D	C	L	T	R	A	L	N	E	G	A	T	I	T	D	E	A	S	A	.	L	E	Y	C	G	F	H	P	Q	L	V	E	G	R	A	D	N	I	K	V	T	R	P	E	D	L	A	L	A	E	F	Y	L
Query Conservation		.	.	.	.	.	.	.																																				.
Alig confidence		.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		R	K	N	D	T	F	Y	P	L	K	H	V	G	I	Y	G	F	R	K	E	T	L	M	E	F	G	A	M	P	P	S	K	L	E	Q	I	E	G	L	E	Q	L	R	L	L	E	N	G	I	K	I	K	V	L	I	T	E	N	Y	Y	H	G	V	D	T	E	E	D	L	K	I	V	E	E	K	L
Template Known Secondary structure		S	S			S	S																					T	S										T		T							T	T										S							S									T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions