Return to main results Retrieve Phyre Job Id

Job DescriptionQ46893
Confidence99.88%DateThu Jan 5 12:35:35 GMT 2012
Rank54Aligned Residues217
% Identity17%Templatec2x5sB_
PDB info PDB header:transferaseChain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20. ........30.... .....40.........50.........60.........70..... ....80
Predicted Secondary structure 







....








.












..


Query SS confidence 













. . . .












.








































. .




Query Sequence  VCAVVPAAGFGRRM. . . . QTECPKQYLSIGN. QTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQ. . ITVVD
Query Conservation 
 






 



....    

 
  
 
.



   
  
        


                   ..     
Alig confidence 













....












.








































..




Template Conservation 








 



 



   

 



 
 
 

   
 
         
 


                    
 

Template Sequence  MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEP
Template Known Secondary structure 




GGGGTTT
BTTB
GGG


BTTB
TTT

GGG
TTS
GGGS
Template Predicted Secondary structure 






































Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   81........90.........100.........110... ......120.........130.........140. ......
Predicted Secondary structure 

















....








.........

Query SS confidence 
































. . . .



























. . . . . . . . .





Query Sequence  GGDERADSVLAGLKAAGDAQWVLVHDAARPCLH. . . . QDDLARLLALSETSRTGGILAAPVRDTM. . . . . . . . . KRAEPG
Query Conservation         
   
       
       
 


 ....   
   
          
         .........      
Alig confidence 
































....



























.........





Template Conservation     


 

  
   
       

  
  
     
   
             

 

 
  
 
 



         
Template Sequence  MKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEG
Template Known Secondary structure  S


TTS
TT
SS
B



S

SS

SSS
TT
Template Predicted Secondary structure 

































Template SS confidence 















































































   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   148.150.........160.... .....170.........180 .........190.....
Predicted Secondary structure 






............

............






........
Query SS confidence 
















. . . . . . . . . . . .















. . . . . . . . . . . .














. . . . . . . .
Query Sequence  KNAIAHTVDRNGLWHAL. . . . . . . . . . . . TPQFFPRELLHDCLTR. . . . . . . . . . . . ALNEGATITDEASAL. . . . . . . .
Query Conservation                   ............         
      ............         
     ........
Alig confidence 
















............















............














........
Template Conservation     
  
 


    
      
 
 







    

  
    
 
                         


 
Template Sequence  VHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYA
Template Known Secondary structure 
S

T

TT

SS
S



Template Predicted Secondary structure 



















Template SS confidence 















































































   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   196...200.........210.........220....
Predicted Secondary structure  .










Query SS confidence  .




























Query Sequence  . EYCGFHPQLVEGRADNIKVTRPEDLALAE
Query Conservation  .   
  
  
       







  

Alig confidence  .




























Template Conservation 



   
 
      
 




 

    
Template Sequence  VMEKSKKVRVVKADFEWSDLGNWSSVREIE
Template Known Secondary structure  TTTT
S

S

B


S
Template Predicted Secondary structure 















Template SS confidence 





























   242.......250.........260.........270.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions