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Job DescriptionP77337
Confidence99.54%DateThu Jan 5 12:27:58 GMT 2012
Rank55Aligned Residues289
% Identity17%Templated1jnra2
SCOP infoFAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20...... ...30.........40.........50.........60.........
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Query Sequence  KFDAIVVGAGVAGSVAALVMAR. . . . AGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVE. . . . . . . . . . .
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Template Sequence  ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMM
Template Known Secondary structure 
S

STTTT


SS
TTT
STTTT
S



SSSSBS



TT
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   22.......30.........40.........50.........60.........70.........80.........90.........100.
 
   70.........80.........90.........100.........110.........120.. .......130......
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Query Sequence  . . . . . . . . . . . RKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAG. . AQFIPGVRVDALVR
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Template Sequence  GLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLK
Template Known Secondary structure  T


TT

B
B
TTS
B
BSSSS
TT
GGG
S
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   137.. 140.........150.........160.........170.........180.........190.........200.......
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Query Sequence  EGN. . . . . . . . . KVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEG
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Template Sequence  DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTW. . . . . . . . . . . . . . . . . . . . . . . . . . .
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TT
TTBSSSS

S



B
SSS

S

SGGGG

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   182.......190.........200.........210.........220.........230....
 
   208.210.........220.........230.........240.........250.........260.........270.........280.......
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Query Sequence  AAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YAIFDTGSGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLK
Template Known Secondary structure  ...................................S
TT
BST








TTT

TT
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   235....240.........250.........260.........270.........
 
   288.290.........300.........310.........320.........330.........340.........350......
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Query Sequence  MVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSC
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Template Sequence  YNRMTTVKGLFAIGDCAGANPHK. FSSGSFTEGRIAAKAAVRFILEQKPNPEIDDAVVEELKKKAYAPM
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TTB
SSBT
GGGB
S



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   425....430.........440....... ..450.........460.........470.........480.........490..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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