Job Description P77337 Confidence 100.00% Date Thu Jan 5 12:27:58 GMT 2012 Rank 1 Aligned Residues 389 % Identity 16% Template c3nixF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:flavoprotein/dehydrogenase; PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43. Resolution 2.60 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	I	V	V	G	A	G	V	A	G	S	V	A	A	L	V	M	A	R	A	G	L	D	V	L	V	I	E	R	G	D	S	A	G	C	K	N	M	T	G	G	R	L	Y	A	H	T	L	E	A	I	I	P	G	F	A	V	S	A	P	V	E	R	K	V	T	R	E	K	I	S	F	L	T	E	E	S	A
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		V	D	V	L	V	I	G	A	G	P	A	G	T	V	A	A	S	L	V	N	K	S	G	F	K	V	K	I	V	E	K	Q	K	F	P	R	F	V	.	.	I	G	E	S	L	L	P	R	C	X	E	H	L	D	E	A	G	F	L	D	A	V	K	A	Q	G	F	Q	Q	K	F	G	A	K	F	V	R	G	K	E
Template Known Secondary structure										S													T	T								S	S		S	S				.	.	S			B			T	T									T								T													T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		V	T	L	D	F	H	R	E	Q	P	D	V	P	Q	H	A	S	Y	T	V	L	R	N	R	L	D	P	W	L	M	E	Q	A	E	Q	A	G	A	Q	F	I	P	G	V	R	V	D	A	L	V	R	E	G	N	K	V	T	G	V	Q	A	G	D	D	I	.	.	.	.	L	E	A	N	V	V	I	L	A	D	G
Query Conservation																																																																			.	.	.	.
Alig confidence																																																																			.	.	.	.
Template Conservation
Template Sequence		I	A	D	F	N	F	S	D	Q	F	S	N	G	W	N	W	T	W	Q	V	P	R	G	N	F	D	K	T	L	A	D	E	A	A	R	Q	G	V	D	V	E	Y	E	V	G	V	T	D	I	K	F	F	G	T	D	S	V	T	T	I	E	D	I	N	G	N	K	R	E	I	E	A	R	F	I	I	D	A	S	G
Template Known Secondary structure							T	T	S		S	S		S		S																					T	T						S										T	T									T	T	S								S							G
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	S	M	L	G	R	S	L	G	M	V	P	A	S	D	P	H	H	Y	A	V	G	V	K	E	V	I	G	L	T	P	E	Q	I	N	D	R	F	N	I	T	G	E	E	G	A	A	W	L	F	A	G	S	P	S	D	G	L	M	G	G	G	F	L	Y	T	N	K	D	S	I	S	L	G	L	V	C	G	L
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	R	V	I	P	R	X	F	G	L	D	K	P	S	G	F	E	S	R	R	T	L	F	T	H	I	K	D	V	K	R	P	V	G	N	R	I	T	A	V	V	H	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	W	I	W	V	I	P	F	S	N	G	N	T	S	V	G	F	V	G	E	P
Template Known Secondary structure		G	G							T	T						S	S													T	T														T	.	.	.	.	.	.	.	.	.	.	.	.	.	T									T	T	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.														.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		G	D	I	A	H	A	Q	K	S	V	P	Q	M	L	E	D	F	K	Q	.	H	P	A	I	R	P	L	I	S	G	G	K	L	L	E	Y	S	A	H	M	V	P	E	G	G	L	A	M	V	P	Q	L	V	N	E	G	V	M	I	V	G	D	A	A	G	F	C	L	N	L	G	F	T	V	R	G	M	D	L	A
Query Conservation																					.
Alig confidence																					.																							.	.																										.	.
Template Conservation																																												.	.																										.	.
Template Sequence		S	Y	F	D	E	Y	T	G	T	P	E	E	R	X	R	A	X	I	A	N	E	G	H	I	A	E	R	F	K	S	E	E	F	L	F	E	P	R	T	I	E	G	.	.	Y	A	I	S	A	S	K	L	Y	G	D	G	F	V	L	T	G	N	A	T	E	F	L	D	P	.	.	I	F	S	S	G	A	T	F	A
Template Known Secondary structure					T	T	S		S											T	T		T	T	T					T	T			B	S	S								.	.						S		S			T	T					G	G	G	T		B			G	.	.	G	G
Template Predicted Secondary structure																																												.	.																										.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380							.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.
Query Sequence		I	A	S	A	Q	A	A	A	T	T	V	I	A	A	K	E	R	A	D	F	S	A	S	S	L	A	Q	Y	K	R	E	L	E	Q	S	C	V	M	R	D	M	Q	H	F	R	K	I	P	A	L	M	E	N	P	R	L	F	S	Q	Y	.	.	.	.	.	.	P	R	M	V	A	D	I	M	N	E	M	F	T	I
Query Conservation																																																														.	.	.	.	.	.
Alig confidence																								.	.											.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																								.	.											.	.	.	.	.
Template Sequence		X	E	S	G	S	K	G	G	K	L	A	V	Q	F	L	K	G	E	E	V	N	W	.	.	E	K	D	F	V	E	H	X	X	Q	.	.	.	.	.	G	I	D	T	F	R	S	F	V	T	G	W	Y	D	G	T	L	H	A	V	F	F	A	K	N	P	D	P	D	H	K	R	X	I	C	S	V	L	A	G	Y
Template Known Secondary structure																		T						.	.				T							.	.	.	.	.														T	S							T		S	S														T	T
Template Predicted Secondary structure																								.	.											.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	K	P	N	Q	P	V	R	K	M	I	M	G	H	A	K	K	I	G	L	I	N	L	L	K	D	G
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		V	W	D	K	N	N	P	F	V	K	K	H	N	T	I	L	K	T	.	.	L	A	K	V	I	Q	X	G
Template Known Secondary structure		T	T		T	T	S					T	T	T	T					.	.
Template Predicted Secondary structure																				.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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