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Job DescriptionP77337
Confidence100.00%DateThu Jan 5 12:27:58 GMT 2012
Rank1Aligned Residues389
% Identity16%Templatec3nixF_
PDB info PDB header:oxidoreductaseChain: F: PDB Molecule:flavoprotein/dehydrogenase; PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESA
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Template Sequence  VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFV. . IGESLLPRCXEHLDEAGFLDAVKAQGFQQKFGAKFVRGKE
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STT


SS
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B

TTT
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TT
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   6...10.........20.........30.........40... ......50.........60.........70.........80...
 
   86...90.........100.........110.........120.........130.........140.........150 .........160.
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Query Sequence  VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDI. . . . LEANVVILADG
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Template Sequence  IADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASG
Template Known Secondary structure  TTS
SS
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TT

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G
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  VNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGL
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Template Sequence  YGRVIPRXFGLDKPSGFESRRTLFTHIKDVKRPVGNRITAVVHKP. . . . . . . . . . . . . KVWIWVIPFSNGNTSVGFVGEP
Template Known Secondary structure  GG
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TT




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   164.....170.........180.........190.........200........ .210.........220.........230
 
   242.......250.........260 .........270.........280.........290.........300.........310.........320
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Query Sequence  GDIAHAQKSVPQMLEDFKQ. HPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLA
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Template Sequence  SYFDEYTGTPEERXRAXIANEGHIAERFKSEEFLFEPRTIEG. . YAISASKLYGDGFVLTGNATEFLDP. . IFSSGATFA
Template Known Secondary structure  TTS
S
TT
TTTTT

BSS


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GGGT
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G..GG

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   236...240.........250.........260.........270....... ..280.........290.........300.. .......310.
 
   321........330.........340.........350.........360.........370.........380 .........390....
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Query Sequence  IASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQY. . . . . . PRMVADIMNEMFTI
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Template Sequence  XESGSKGGKLAVQFLKGEEVNW. . EKDFVEHXXQ. . . . . GIDTFRSFVTGWYDGTLHAVFFAKNPDPDHKRXICSVLAGY
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..T.....TST
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   312.......320.........330... ......340... ......350.........360.........370.........380....
 
   395....400.........410.........420..
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Query Sequence  DGKPNQPVRKMIMGHAKKIGLINLLKDG
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Template Sequence  VWDKNNPFVKKHNTILKT. . LAKVIQXG
Template Known Secondary structure  TT
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   385....390.........400.. .......410
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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