Job Description P77337 Confidence 99.13% Date Thu Jan 5 12:27:58 GMT 2012 Rank 111 Aligned Residues 310 % Identity 12% Template c3h8lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism Resolution 2.57 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																								.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	A	I	V	V	G	A	G	V	A	G	S	V	A	A	L	V	M	A	R	A	.	.	.	G	L	D	V	L	V	I	E	R	G	D	S	A	G	C	K	N	M	.	.	.	.	.	.	.	.	.	T	G	G	R	L	Y	A	H	T	L	E	A	I	I	P	G	F	A	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	V	L	V	L	G	G	R	F	G	A	L	T	A	A	Y	T	L	K	R	L	V	G	S	K	A	D	V	K	V	I	N	K	S	R	F	S	Y	F	R	P	A	L	P	H	V	A	I	G	V	R	D	V	D	E	L	K	V	D	L	S	E	A	L	P	E	K	G	I	Q	F	Q	E	G	T	V	E	K	I
Template Known Secondary structure									S	S															G	G	G	S							S	S	S							S	S					S	S															T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	S	A	P	V	E	R	K	V	T	R	E	K	I	S	F	L	T	E	E	S	A	V	T	L	D	F	H	R	E	Q	P	D	V	P	Q	H	A	S	Y	T	V	L	R	N	R	L	D	P	W	L	M	E	Q	A	E	Q	A	G	A	Q	F	I	P	G	V	R	V	D	A	L	V	R	E	G	N	K	V	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		D	A	K	S	S	M	V	Y	Y	T	K	P	D	G	S	M	A	E	E	E	Y	D	Y	V	I	V	G	I	G	A	H	L	A	T	E	L	V	K	G	W	D	K	Y	G	Y	S	V	C	E	P	E	F	A	T	K	L	R	E	K	L	E	S	F	Q	G	G	N	I	A	I	G	S	G	P	F	Y	Q	G	H	N
Template Known Secondary structure			T	T	T	T							T	T	S								S												G	G	G	S	B	T								S	S	S	T	T														S										B					S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.
Query Sequence		G	V	Q	A	G	D	D	I	L	E	A	N	V	V	I	L	A	D	G	V	N	S	M	L	G	R	S	L	G	M	V	P	A	S	D	P	H	H	Y	A	V	G	V	K	E	V	I	G	L	T	P	E	Q	I	N	D	R	.	.	.	.	.	F	N	I	T	G	E	E	G	A	A	W	L	F	A	G	S	P	S
Query Conservation																																																											.	.	.	.	.
Alig confidence																																																											.	.	.	.	.
Template Conservation
Template Sequence		P	K	P	K	V	P	E	N	F	V	P	N	A	D	S	A	C	E	G	P	V	F	E	M	S	L	M	L	H	G	Y	F	K	K	K	G	M	L	D	K	V	H	V	T	V	F	S	P	G	E	Y	L	S	D	L	S	P	N	S	R	K	A	V	A	S	I	Y	N	Q	L	G	I	K	L	V	H	N	F	K	I
Template Known Secondary structure		S			B	S		T	T	S	S				S		S	S																	T	T	T		T	T	T								S	S	S	S	S	T	T	S																T						S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	M	G	G	G	F	L	Y	T	N	K	D	S	I	S	L	G	L	V	C	G	L	G	D	I	A	H	A	Q	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	I	R	P	L	I	S	G	G	K	L	L	E	Y	S	A	H	M	V	P	E	G	G	L	A	M	V	P	Q	L	V	N	E	G	V
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		K	E	I	R	E	H	E	I	V	D	E	K	G	N	T	I	P	A	D	I	T	I	L	L	P	P	Y	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	A	L	K	N	S	T	P	D	L	V	D	D	G	G	F	I	P	T	D	.	.	L	N	M	V	S	I	K	Y	D	N	V
Template Known Secondary structure						S	S					T	T	S						S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	S		G	G	G	S		T	T	S		B		B	B	.	.	T	T	S	B	B	S	S		T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	V	G	D	A	A	G	F	C	L	N	L	G	F	T	V	R	G	M	D	L	A	I	A	S	A	Q	A	A	A	T	T	V	I	A	A	K	E	R	A	D
Query Conservation
Alig confidence														.	.						.	.	.
Template Conservation														.	.						.	.	.
Template Sequence		Y	A	V	G	D	A	N	S	M	T	V	P	.	.	K	L	G	Y	L	.	.	.	A	V	M	T	G	R	I	A	A	Q	H	L	A	N	R	L	G	V	P	T
Template Known Secondary structure					G	G	G	B	T	T			S	.	.						.	.	.																T	T
Template Predicted Secondary structure														.	.						.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions