Phyre 2 alignment of P77337 with c3da1A

Job Description P77337
Confidence 99.63% Date Thu Jan 5 12:27:58 GMT 2012

Rank 43 Aligned Residues 317

% Identity 17% Template c3da1A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence	M	S	D	D	K	F	D	A	I	V	V	G	A	G	V	A	G	S	V	A	A	L	V	M	A	R	A	G	L	D	V	L	V	I	E	R	G	D	S	A	G	C	K	N	M	T	G	G	R	L	Y	A	H	T	L	.	.	.	.	E	A	I	I	P	G	F	A	V	S	A	P	V	E	R	K	V	T	R	E	K
Query Conservation																																																								.	.	.	.
Alig confidence																																																								.	.	.	.
Template Conservation
Template Sequence	X	S	E	K	Q	L	D	L	L	V	I	G	G	G	I	T	G	A	G	I	A	L	D	A	Q	V	R	G	I	Q	T	G	L	V	E	X	N	D	F	A	S	G	T	S	S	R	S	T	K	L	V	H	G	V	G	K	E	R	A	I	V	Y	E	N	A	P	H	V	T	T	P	E	W	X	L	L	P	I	F	K
Template Known Secondary structure		T	T	S										S												T	T	T								S	S	S	T	T		S	G	G	G	S	S																			T	T	T
Template Predicted Secondary structure
Template SS confidence
	14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																												.	.	.																																																.	.	.
Query SS confidence																												.	.	.																																																.	.	.
Query Sequence	I	S	F	L	T	E	E	S	A	V	T	L	D	F	H	R	E	Q	P	D	V	P	Q	H	A	S	Y	.	.	.	T	V	L	R	N	R	L	D	P	W	L	M	E	Q	A	E	Q	A	G	A	Q	F	I	P	G	V	R	V	D	A	L	V	R	E	G	N	K	V	T	G	V	Q	A	G	D	D	I	.	.	.
Query Conservation																												.	.	.																																																.	.	.
Alig confidence																												.	.	.																																																.	.	.
Template Conservation
Template Sequence	R	Y	X	L	N	E	K	Q	T	L	E	K	E	P	L	L	R	K	E	N	L	K	G	G	G	I	Y	V	E	Y	R	T	D	D	A	R	L	T	L	E	I	X	K	E	A	V	A	R	G	A	V	A	L	N	Y	X	K	V	E	S	F	I	Y	D	Q	G	K	V	V	G	V	V	A	K	D	R	L	T	D	T
Template Known Secondary structure														T	T	S			T	T																												T	T						S										T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
	136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

				151	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure	.	.	.															.
Query SS confidence	.	.	.															.
Query Sequence	.	.	.	L	E	A	N	V	V	I	L	A	D	G	V	N	S	.	M	L	G	R	S	L	G	M	V	P	A	S	D	P	H	H	Y	A	V	G	V	K	E	V	I	G	L	T	P	E	Q	I	N	D	R	F	N	I	T	G	E	E	G	A	A	W	L	F	A	G	S	P	S	D	G	L	M	G	G	G	F	L
Query Conservation	.	.	.															.
Alig confidence	.	.	.															.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	H	T	I	Y	A	K	K	V	V	N	A	A	G	P	W	V	D	T	L	R	E	K	D	R	S	K	H	G	K	Y	L	K	L	S	K	G	V	H	L	V	V	D	Q	S	R	F	P	L	R	Q	A	V	Y	F	D	T	E	S	D	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	I	F	A
Template Known Secondary structure														G	G	G							T	T	T				S	S														G	G	G	S			S	S							S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.															.	.	280	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence	Y	T	N	K	D	S	I	S	L	G	L	V	C	G	L	G	D	.	I	A	H	A	Q	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	I	R	P	L	I	S	G	G	K	L	L	E	Y	S	A	H	M	V	P	E	G	G	L	A	M	V	P	Q	L	V	N	E	G	V	M	I	V	G	D	A	A	G
Query Conservation																		.
Alig confidence																		.																			.	.																.	.	.	.
Template Conservation																																					.	.																.	.	.	.
Template Sequence	I	P	R	E	G	K	T	Y	I	G	T	T	D	T	F	Y	D	K	D	I	A	S	P	R	X	T	V	E	D	R	D	Y	I	L	A	A	.	.	A	N	Y	X	F	P	S	L	R	L	T	A	D	D	V	.	.	.	.	E	S	S	W	A	G	L	R	P	L	I	H	E	D	E	I	F	F	S	D	S	G	L
Template Known Secondary structure				T	T													S		T	T																.	.						T	T					T	T	T		.	.	.	.																				S	S
Template Predicted Secondary structure																																					.	.																.	.	.	.
Template SS confidence
	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	C	L	N	L	G	F	T	V	R	G	M	D	L	A	I	A	S	A	Q	A	A	A	T	T	V	I	A	A	K	E	R	A	D	F	S
Query Conservation
Alig confidence					.	.	.	.
Template Conservation					.	.	.	.
Template Sequence	I	S	I	A	.	.	.	.	G	G	K	L	T	G	Y	R	K	X	A	E	R	T	V	D	A	V	A	Q	G	L	N	V	N	E	P	C
Template Known Secondary structure					.	.	.	.				S	T	T																	T
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
	367	.	.	370					.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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