Job Description P77337 Confidence 99.44% Date Thu Jan 5 12:27:58 GMT 2012 Rank 71 Aligned Residues 304 % Identity 19% Template c2gqfA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd Resolution 2.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	F	D	A	I	V	V	G	A	G	V	A	G	S	V	A	A	L	V	M	A	R	A	G	L	D	V	L	V	I	E	R	G	D	S	A	G	C	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	T	G	G	R	L	Y	A	H	T	L	E	A	I	I	P	G	F	A	V	S	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	S	E	N	I	I	I	G	A	G	A	A	G	L	F	C	A	A	Q	L	A	K	L	G	K	S	V	T	V	F	D	N	G	K	K	I	G	R	K	I	L	X	S	G	G	G	F	C	N	F	T	N	L	E	V	T	P	A	H	Y	L	S	Q	N	P	H	F	V	K	S	A	L	A	R	Y	T	N	W	D
Template Known Secondary structure					S							S													T	T								S	S	S	S	S							G	G	G	G	T						S	S			G	G	G				S		T	T	S	T							S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.
Predicted Secondary structure																																																																												.	.	.
Query SS confidence																																																																												.	.	.
Query Sequence		P	V	E	R	K	V	T	R	E	K	I	S	F	L	T	E	E	S	A	V	T	L	D	F	H	R	E	Q	P	D	V	P	Q	H	A	S	Y	T	V	L	R	N	R	L	D	P	W	L	M	E	Q	A	E	Q	A	G	A	Q	F	I	P	G	V	R	V	D	A	L	V	R	E	G	N	K	.	.	.	V	T	G
Query Conservation																																																																												.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	S	L	V	A	E	Q	G	I	T	Y	H	E	K	E	L	G	Q	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	D	E	G	A	E	Q	I	V	E	X	L	K	S	E	C	D	K	Y	G	A	K	I	L	L	R	S	E	V	S	Q	V	E	R	I	Q	N	D	E	K	V	R	F	V
Template Known Secondary structure									T	T							S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		T															T						S											S		S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.												.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	A	G	D	D	I	L	E	A	N	V	V	I	L	A	D	G	V	N	S	.	.	.	.	.	.	.	.	.	.	.	M	L	G	R	S	L	G	M	V	P	A	S	D	P	H	H	Y	A	V	G	V	K	E	V	I	G	L	T	P	E	Q	I	N	D	R	F	N	I	T	G	E	E	G	A	A	W	L	F
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	V	N	S	T	Q	W	Q	C	K	N	L	I	V	A	T	G	G	L	S	X	P	G	L	G	A	T	P	F	G	Y	Q	I	A	E	Q	F	G	I	P	V	.	.	.	.	.	.	.	.	.	I	P	P	R	A	S	L	V	P	F	T	Y	R	E	T	D	K	F	L	T	A	L	S	G	I	S	L	P	V
Template Known Secondary structure					T	T						S									S	S		G	G	G	T			S									T	T				.	.	.	.	.	.	.	.	.							S							G	G	G	G	G	G	G	G	G	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.										190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.																																				.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	S	P	S	D	G	L	M	G	G	G	F	L	Y	T	N	K	D	S	I	S	L	G	L	V	C	G	L	G	D	I	A	H	A	Q	K	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	M	L	E	D
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	T	A	L	C	G	K	S	F	Y	N	Q	L	L	F	T	H	R	G	I	S	G	P	A	V	L	Q	I	S	N	Y	W	Q	P	T	E	S	V	E	I	D	L	L	P	N	H	N	V	E	E	E	I	N	Q	A	K	Q	S	S	P	K	Q	X	L	K	T	I	L	V	R	L	L	P	K	K	L	V	E	L
Template Known Secondary structure						T	T	S											S	S				S							T	T	T			T	T							S		S	S	S														T	T	S	B						T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		258	.	260	.									.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.																					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	K	Q	H	.	.	.	.	.	.	.	.	P	A	I	R	P	L	I	S	G	G	K	L	L	E	Y	S	A	H	M	V	P	E	G	G	L	A	M	V	P	Q	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	G	V	M	I	V	G	D	A	A	G	F	C	L	N
Query Conservation						.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	I	E	Q	G	I	V	Q	D	E	V	I	A	N	I	S	K	V	R	V	K	N	L	V	D	F	I	H	H	W	E	F	T	P	N	G	T	E	G	Y	R	T	A	E	V	T	X	G	G	V	D	T	K	V	I	S	S	K	T	X	E	S	N	Q	V	S	G	L	Y	F	I	G	E	V	L	D	V	T	G	W
Template Known Secondary structure					T	T	S	S				B	G	G	G																					S					T	T	T		S								G	G	G	B		T	T	T		B	B	S	S	S	T	T					G	G	G	B	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	F	T	V	R	G	M	D	L	A	I	A	S	A	Q	A	A	A	T	T	V	I	A
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		L	G	.	.	G	Y	N	F	Q	W	A	W	S	S	A	Y	A	C	A	L	S	I	S	R
Template Known Secondary structure		T	T	.	.	T																			T
Template Predicted Secondary structure				.	.
Template SS confidence
		379	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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