Job Description P77337 Confidence 99.73% Date Thu Jan 5 12:27:58 GMT 2012 Rank 36 Aligned Residues 320 % Identity 18% Template c2gahB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit; PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.												.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.													.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.													.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	K	F	D	A	I	V	V	G	A	G	V	A	G	S	V	A	A	L	V	M	A	R	A	G	.	.	L	D	V	L	V	I	E	R	G	D	S	A	.	G	C	K	N	M	T	G	G	R	L	Y	A	.	.	.	.	.	.	.	.	.	.	.	H	T	L	E	A	I	I	P	G	F	A	V	S	A	P	V
Query Conservation																												.	.													.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.													.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	S	Y	D	A	I	I	V	G	G	G	G	H	G	L	A	T	A	Y	F	L	A	K	N	H	G	I	T	N	V	A	V	L	E	K	G	W	L	A	G	G	N	X	A	R	N	T	T	I	I	R	S	N	Y	L	W	D	E	S	A	G	I	Y	E	K	S	L	K	L	W	E	Q	L	P	E	D	L	E	Y
Template Known Secondary structure			S										S																								S	S	S	T	T		S	G	G	G	T	S				B					S	S																					T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80																																					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	K	V	T	R	E	K	I	S	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	E	S	A	V	T	L	D	F	H	R	E	Q	P	D	V	P	Q	H	A	S	Y	T	V	L	R	N	R	L	D	P
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	L	F	S	Q	R	G	V	L	N	L	A	H	T	L	G	D	V	R	E	S	V	R	R	V	E	A	N	K	L	N	G	V	D	A	E	W	L	D	P	S	Q	V	K	E	A	C	P	I	I	N	T	S	D	D	I	R	Y	P	V	X	G	A	T	W	Q	P	R	A	G	I	A	K	H	D	H	V	A	W
Template Known Secondary structure						B										S																T	T	T																T	T	S			S	S		S	S	S									T	T		B	B
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		W	L	M	E	Q	A	E	Q	A	G	A	Q	F	I	P	G	V	R	V	D	A	L	V	R	E	G	N	K	V	T	G	V	Q	A	G	D	D	I	L	E	A	N	V	V	I	L	A	D	G	V	N	S	.	M	L	G	R	S	L	G	M	V	P	A	S	D	P	H	H	Y	A	V	G	V	K	E	V	I	G	L
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		A	F	A	R	K	A	N	E	X	G	V	D	I	I	Q	N	C	E	V	T	G	F	I	K	D	G	E	K	V	T	G	V	K	T	T	R	G	T	I	H	A	G	K	V	A	L	A	G	A	G	H	S	S	V	L	A	E	X	A	G	F	E	L	P	I	Q	S	H	P	L	Q	A	L	V	S	E	L	F	E	P
Template Known Secondary structure										T	T						S									S	S	S	B							T	T													G	G	G									T																			S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	E	Q	I	N	D	R	F	N	I	T	G	E	E	G	A	A	W	L	F	A	G	S	P	S	D	G	L	M	G	G	G	F	L	Y	T	N	K	D	S	I	S	L	G	L	V	C	G	L	G	D	I	A	H	A	Q	K	S	V	P	Q	M	L	E	D	F	K	Q	H	P	A	I	R	P	L	I	S	G	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	P	T	V	V	X	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	I	H	V	Y	V	S	Q	A	H	K	G	E	L	V	X	G	A	G	I	D	S	Y	N	G	Y	G	Q	R	G	A	F	H	V	I	Q	E	Q	X	A	A	A	V	E	L	F	P	I	F	A	R	A
Template Known Secondary structure					S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T							T	T	S										S	S				S	S				T															G	G	G	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.																				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		K	L	L	E	Y	S	A	H	M	V	P	E	G	G	L	A	M	V	P	Q	L	V	N	E	G	V	M	I	V	G	D	A	.	.	A	G	F	C	L	N	L	G	F	T	V	R	G	M	D	L	A	I	A	S	A	Q	A	A	A	T	T	V	I	A	A	K	E	R	A	D	F	S	A	S	S	L	A	Q	Y	K
Query Conservation																																		.	.
Alig confidence														.	.	.	.	.	.	.	.	.												.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		H	V	L	R	T	W	G	G	I	V	D	T	.	.	.	.	.	.	.	.	.	T	X	D	A	S	P	I	I	S	K	T	P	I	Q	N	L	Y	V	N	C	G	W	G	T	G	G	F	K	G	T	P	G	A	G	F	T	L	A	H	T	I	A	N	D	E	P	H	E	L	N	K	P	F	S	L	E	R	F	E
Template Known Secondary structure														.	.	.	.	.	.	.	.	.		T	T	S								S	S	B	T							B	T	T			S	T	T															T	S			T	T	T	G	G	G		T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.										.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		350
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		391

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions